Non-Coding RNA Search

Ss1.1-Pig1-75O16.5

Sequence:


               
               CTTGGCCCGTTCTACCCCCAGGCAAGCCGTTTGCCTGGACCACCCGTGTCTACTGCCTCC
TCCTCCACTGGCTTGGCCTCTGCAGGCGGAGTTGGTGACCAGGTTGAAGCTACCATCTGC
TCCGGTGGGGCAGGGGTGCCCACCACCTCTGTGACTGCCAGCATGGTGTCCTCTAAAGTG
CCCACCAACTCAGCATTTGCCAGCACCATGCCTTCCAAGTTGCCCACCAGCCTCAAGCCC
CCTGGTGCAATGTCCACTAACGTGTCCCCCAGTGTAGCACCATCCAAATTGCCCATCAAC
TCCACGCGTTCTGGCGCAATGTCACCCAAAGTGCCTACTGGCTTGCTGCCGGACCACAGG
AAACCTACAAGCACGGTGGCCAGCAAGGTGCCTGCCAACACTGGGCCCACCATCAGGAGC
AGCAACCGTCCTGAAAAGGAGACTCCAGCATCTCCAGCGCCCATAGGCACTGCCGCTGGA
GGCACCTCGCCCTGGCCAGACAGCAACTCTGACCGCTGGGACTCAGAGGAGCCGGAGCTG
AGCAAGCCTGGTAGGCTGGTGTCCAGGATGGATAGCCAGCCTTTCTCGGGCTCCTCCGAG
GACCTCGCCATCAGCTACAGCAATCCTCTGGGCTCAGGGCCTGACAACACCCCAGAGGAG
AACGAGTACGTGTCAGTGGATACTATTAGGATCCAGGGGGACCCCAGCACCCCACCTGTA
GGGGACAGCCCGGGGCCACTCACTGCCTCGGAGTTCCAGGCAGAGGAGGAGTTGGAAGAG
GGGTTGGAAGAGGTCAAGACTGAGGCTAGGGCTCCGTGGGTTGGGGTGGCGGTGGTTGGG
GTGCTTCTGGCCACACTCCTGGCCATGCTGTACCGGCGGCGCCTGCCCCAGTGAGGCTCC
TGGGCCCTGTCCACCACGTATCTGTTCCCTTCTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGCCCGTTCTACCCCCAGGCAAGCCGTTTGCCTGGACCACCCGTGTCTACTGCCTCC
TCCTCCACTGGCTTGGCCTCTGCAGGCGGAGTTGGTGACCAGGTTGAAGCTACCATCTGC
TCCGGTGGGGCAGGGGTGCCCACCACCTCTGTGACTGCCAGCATGGTGTCCTCTAAAGTG
CCCACCAACTCAGCATTTGCCAGCACCATGCCTTCCAAGTTGCCCACCAGCCTCAAGCCC
CCTGGTGCAATGTCCACTAACGTGTCCCCCAGTGTAGCACCATCCAAATTGCCCATCAAC
TCCACGCGTTCTGGCGCAATGTCACCCAAAGTGCCTACTGGCTTGCTGCCGGACCACAGG
AAACCTACAAGCACGGTGGCCAGCAAGGTGCCTGCCAACACTGGGCCCACCATCAGGAGC
AGCAACCGTCCTGAAAAGGAGACTCCAGCATCTCCAGCGCCCATAGGCACTGCCGCTGGA
GGCACCTCGCCCTGGCCAGACAGCAACTCTGACCGCTGGGACTCAGAGGAGCCGGAGCTG
AGCAAGCCTGGTAGGCTGGTGTCCAGGATGGATAGCCAGCCTTTCTCGGGCTCCTCCGAG
GACCTCGCCATCAGCTACAGCAATCCTCTGGGCTCAGGGCCTGACAACACCCCAGAGGAG
AACGAGTACGTGTCAGTGGATACTATTAGGATCCAGGGGGACCCCAGCACCCCACCTGTA
GGGGACAGCCCGGGGCCACTCACTGCCTCGGAGTTCCAGGCAGAGGAGGAGTTGGAAGAG
GGGTTGGAAGAGGTCAAGACTGAGGCTAGGGCTCCGTGGGTTGGGGTGGCGGTGGTTGGG
GTGCTTCTGGCCACACTCCTGGCCATGCTGTACCGGCGGCGCCTGCCCCAGTGAGGCTCC
TGGGCCCTGTCCACCACGTATCTGTTCCCTTCTCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-94, + strand, RNAz p=0.948769

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-94, + strand, RNAz p=0.948769

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-442, gnl|bosTau2|chr13 (33844384-33844829)
               

               
               1-442, gnl|Hg17|chr20 (3792964-3793439)
               

               
               1-442, gnl|Mm7|chr2 (130986117-130986526)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-442, gnl|bosTau2|chr13 (33844384-33844829)
               

               
               1-442, gnl|Hg17|chr20 (3792964-3793439)
               

               
               1-442, gnl|Mm7|chr2 (130986117-130986526)

	1-442, gnl\|bosTau2\|chr13 (33844384-33844829)
	1-442, gnl\|Hg17\|chr20 (3792964-3793439)
	1-442, gnl\|Mm7\|chr2 (130986117-130986526)