Non-Coding RNA Search

Ss1.1-Pig1-76I21.5

Sequence:


               
               AAAAAGAGGGTGGGGGTGTACATGCACCCTTGCTGTAAAAAAATAAATAATAAATGCAAG
GAGTGGAGGGGGCTCTCTTTCATTCCAGAGAGGGCCGGCTAGGCTACCTAAGCTTCATCT
TGTTCTGTTTAACCTTGATAAGATATTGGGAAAGCCTTGAACTTCACAAAGGAGTGGAGT
TGTAGGCCCGGTGGGGAATGACCCAGAGTCCAGGTTACACCGCANCTTATTCCACTGAGT
CGGCGCTGATGCTGAGGTTTGGGATCTGTTCTTAACAAGATATCCATTTTCCATTTGAGG
CTGCTCCTGCAGCTGCCATTTTATGAGGGCANAGGAGGGGGCANAGGGGCGGGAGAAAAA
AGCAAAAATTCAAGTAAATTAACATTTCTTCCCCCGAAAGGGAAAGGACCTTTATCAGGT
AGACATTGAAGAAGTCTCTTCTATTTCTAAATGCCTGTGTATTTTAGAAGAGGTACATTT
TAATTTCCAGATTTAATGATTGTACAGGTAAGAAAATGAAATCCTCTAGTTTTAGGTCTG
GATCACCCCTCAGGCATTGATGGGCTGTATGCCTGCTGCTTCAAGGACCGGTGAAATGTT
GGCACTTACTGGGCCAGAAACGAAGCACCACCTGGCTTTCTATCCAGGGAAGAGGTTCTG
GCTGTGGCATTTGCTGACCTGAGCCAGGAAAGACAGTTTTAAGTCAGGGGTGGCCCTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGAGGGTGGGGGTGTACATGCACCCTTGCTGTAAAAAAATAAATAATAAATGCAAG
GAGTGGAGGGGGCTCTCTTTCATTCCAGAGAGGGCCGGCTAGGCTACCTAAGCTTCATCT
TGTTCTGTTTAACCTTGATAAGATATTGGGAAAGCCTTGAACTTCACAAAGGAGTGGAGT
TGTAGGCCCGGTGGGGAATGACCCAGAGTCCAGGTTACACCGCANCTTATTCCACTGAGT
CGGCGCTGATGCTGAGGTTTGGGATCTGTTCTTAACAAGATATCCATTTTCCATTTGAGG
CTGCTCCTGCAGCTGCCATTTTATGAGGGCANAGGAGGGGGCANAGGGGCGGGAGAAAAA
AGCAAAAATTCAAGTAAATTAACATTTCTTCCCCCGAAAGGGAAAGGACCTTTATCAGGT
AGACATTGAAGAAGTCTCTTCTATTTCTAAATGCCTGTGTATTTTAGAAGAGGTACATTT
TAATTTCCAGATTTAATGATTGTACAGGTAAGAAAATGAAATCCTCTAGTTTTAGGTCTG
GATCACCCCTCAGGCATTGATGGGCTGTATGCCTGCTGCTTCAAGGACCGGTGAAATGTT
GGCACTTACTGGGCCAGAAACGAAGCACCACCTGGCTTTCTATCCAGGGAAGAGGTTCTG
GCTGTGGCATTTGCTGACCTGAGCCAGGAAAGACAGTTTTAAGTCAGGGGTGGCCCTGAG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-95, - strand, RNAz p=0.857722
               

               
               288-447, - strand, RNAz p=0.976228
               

               
               589-708, + strand, RNAz p=0.731117

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-95, - strand, RNAz p=0.857722
               

               
               288-447, - strand, RNAz p=0.976228
               

               
               589-708, + strand, RNAz p=0.731117

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-715, gnl|bosTau2|chr2 (16989808-16989098)
               

               
               1-715, gnl|Hg17|chr2 (176823032-176823723)
               

               
               1-715, gnl|Mm7|chr2 (74551756-74552498)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-715, gnl|bosTau2|chr2 (16989808-16989098)
               

               
               1-715, gnl|Hg17|chr2 (176823032-176823723)
               

               
               1-715, gnl|Mm7|chr2 (74551756-74552498)

	1-95, - strand, RNAz p=0.857722
	288-447, - strand, RNAz p=0.976228
	589-708, + strand, RNAz p=0.731117

	1-715, gnl\|bosTau2\|chr2 (16989808-16989098)
	1-715, gnl\|Hg17\|chr2 (176823032-176823723)
	1-715, gnl\|Mm7\|chr2 (74551756-74552498)