Non-Coding RNA Search

Ss1.1-Pig1-76K12.5

Sequence:


               
               TGGGGGCGGGAGTCAGCTGAGCTCCTCGGGCGAGGTTGGGATCACCTGAGAGTGATCGAA
GGGAGCCGATGTTTTTTTAGGCGCGGGAGTTGGGTGCTGAATTGAGCCCCCTTCAGGGGG
GGAGGGCTCCCTGGTCTTCTCGCTCTATAAGGCGAGAGCGAGAAGATCCATAGGATTTTA
AAGAGGAGGAGCCGAATTACCAGGATCTGTCAGATCCAGATCGAAGCTGAGGAGTCGCAG
CTTCCCATCTGGGGAGACGGGGATCCCTGTAGGGAGCCCTGTTGTAATCTCTGGGCCTGG
GACGGAGGACCCAGCGGCCGGGCACCATGGCGTCTATCTTGGATGAATATGAGGACTCCC
TGTCCCGCTCGGCCGTCTTGCAGCCCGGCTGCCCCAGCGTGGGCATCCCCCATTCGGGGT
ATGTGAATGCCCAGCTAGAGAAGGAAGCGCCCATCTTCTCGAAGCAGCGCATTGACTTTA
CCCCTTCCGAGCGTATCACCAGTCTTGTCGTTTCCTGCAATCAGCTCTGCATGAGCCTGG
GCAAGGATACACTACTTCGCATTGACTTAGGCAAAGCAAATGAACCCAACCACATGGAGC
TGGGGCGCAAGGATGATGCCAAAGTTCACAAGATGTTCCTGGACCATACTGGCTCTCACC
TGCTGATTGCTCTGAGCAGCACAGAGGTCCTCTACGTGAACCGTAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGGCGGGAGTCAGCTGAGCTCCTCGGGCGAGGTTGGGATCACCTGAGAGTGATCGAA
GGGAGCCGATGTTTTTTTAGGCGCGGGAGTTGGGTGCTGAATTGAGCCCCCTTCAGGGGG
GGAGGGCTCCCTGGTCTTCTCGCTCTATAAGGCGAGAGCGAGAAGATCCATAGGATTTTA
AAGAGGAGGAGCCGAATTACCAGGATCTGTCAGATCCAGATCGAAGCTGAGGAGTCGCAG
CTTCCCATCTGGGGAGACGGGGATCCCTGTAGGGAGCCCTGTTGTAATCTCTGGGCCTGG
GACGGAGGACCCAGCGGCCGGGCACCATGGCGTCTATCTTGGATGAATATGAGGACTCCC
TGTCCCGCTCGGCCGTCTTGCAGCCCGGCTGCCCCAGCGTGGGCATCCCCCATTCGGGGT
ATGTGAATGCCCAGCTAGAGAAGGAAGCGCCCATCTTCTCGAAGCAGCGCATTGACTTTA
CCCCTTCCGAGCGTATCACCAGTCTTGTCGTTTCCTGCAATCAGCTCTGCATGAGCCTGG
GCAAGGATACACTACTTCGCATTGACTTAGGCAAAGCAAATGAACCCAACCACATGGAGC
TGGGGCGCAAGGATGATGCCAAAGTTCACAAGATGTTCCTGGACCATACTGGCTCTCACC
TGCTGATTGCTCTGAGCAGCACAGAGGTCCTCTACGTGAACCGTAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               78-303, + strand, RNAz p=0.984869

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-303, + strand, RNAz p=0.984869

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC001513, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC001513, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-427, gnl|bosTau2|chr10 (25710413-25710837)
               

               
               3-427, gnl|Hg17|chr15 (38973932-38974358)
               

               
               3-427, gnl|Mm7|chr2 (119029599-119029988)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-427, gnl|bosTau2|chr10 (25710413-25710837)
               

               
               3-427, gnl|Hg17|chr15 (38973932-38974358)
               

               
               3-427, gnl|Mm7|chr2 (119029599-119029988)

	3-427, gnl\|bosTau2\|chr10 (25710413-25710837)
	3-427, gnl\|Hg17\|chr15 (38973932-38974358)
	3-427, gnl\|Mm7\|chr2 (119029599-119029988)