Non-Coding RNA Search

Ss1.1-Pig1-77C08.5

Sequence:


               
               AGCTGCCTGCTGGACCTGCGCGACTCCTTCTCACAGCGGCTGCACCATGAGGCTGAGCGG
CAGCCTGGAGCTGCCACTCTCACTGCCACTCAACTGCTGGAGAAGTACAAGAGCCCGCCT
CAAGACCCCGGAGGCGCGGGGGCCGCANGCACGGTCACCAGCCACAGCAAGGCTGTCCTG
TCGCAGGCTTGGCGGGAGGAGCGCGACCGGCTGCTGCGCCGCATGGAGAGCATGCGCAAG
GAGAAGCGCGTCTACAGCCGCTTCGAGGTCTTCTGCAAAAAGGAGGAGCCCGGGGGCCCG
GGGGCTGGAGGGAGCCCGGCGGAGGAGGACGCCAGGGACAGCAAGGTGGGCAAGTTCATG
CCCAAGATCCTGGGCACCTTCAAGAGCAAGAAATGAGTCTCCCAGGGCAGGGTGCCCGCG
TTCTGGCCCCCTGGCAGGCGGAAGACCTGGCCCTGAGCCGGAGCACCTGGAACCCGGCTC
TACGGGAGGCTCACCCGCTGGTGGTCCTCCCTGCCCCTCGGCCTCTGCCCTCAGGCCTGC
CGCCGCCAGGTGCCCCGGGCCTCCGTCCTCCAGGTCTGGCTCCTCTCCCTCACACCGGCG
TCTCTGGACCCTCAGCCTCTTGCTTCTTACACATCTGTCTCCGTTGTTTGGACTTCAGGG
ACCCGTTTCTCTGTGCCTCTGTCCCCGTATTTTGGGGTGCCCATCTCTGTGCCTCAGCCC
CCGTATTTTGGGGGTCACCTCTGTGCCTCAGTCCCCGTATTTTGGGGGTCACCTCTGTGC
CTCAGCCCCCGTATTTTGGGGGTCACCTCTGTGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGCCTGCTGGACCTGCGCGACTCCTTCTCACAGCGGCTGCACCATGAGGCTGAGCGG
CAGCCTGGAGCTGCCACTCTCACTGCCACTCAACTGCTGGAGAAGTACAAGAGCCCGCCT
CAAGACCCCGGAGGCGCGGGGGCCGCANGCACGGTCACCAGCCACAGCAAGGCTGTCCTG
TCGCAGGCTTGGCGGGAGGAGCGCGACCGGCTGCTGCGCCGCATGGAGAGCATGCGCAAG
GAGAAGCGCGTCTACAGCCGCTTCGAGGTCTTCTGCAAAAAGGAGGAGCCCGGGGGCCCG
GGGGCTGGAGGGAGCCCGGCGGAGGAGGACGCCAGGGACAGCAAGGTGGGCAAGTTCATG
CCCAAGATCCTGGGCACCTTCAAGAGCAAGAAATGAGTCTCCCAGGGCAGGGTGCCCGCG
TTCTGGCCCCCTGGCAGGCGGAAGACCTGGCCCTGAGCCGGAGCACCTGGAACCCGGCTC
TACGGGAGGCTCACCCGCTGGTGGTCCTCCCTGCCCCTCGGCCTCTGCCCTCAGGCCTGC
CGCCGCCAGGTGCCCCGGGCCTCCGTCCTCCAGGTCTGGCTCCTCTCCCTCACACCGGCG
TCTCTGGACCCTCAGCCTCTTGCTTCTTACACATCTGTCTCCGTTGTTTGGACTTCAGGG
ACCCGTTTCTCTGTGCCTCTGTCCCCGTATTTTGGGGTGCCCATCTCTGTGCCTCAGCCC
CCGTATTTTGGGGGTCACCTCTGTGCCTCAGTCCCCGTATTTTGGGGGTCACCTCTGTGC
CTCAGCCCCCGTATTTTGGGGGTCACCTCTGTGCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-101, + strand, RNAz p=0.762971

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-101, + strand, RNAz p=0.762971

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-101, gnl|bosTau2|chr14 (279364-279264)
               

               
               1-101, gnl|canFam2|chr13 (40356977-40357236)
               

               
               1-101, gnl|galGal2|chrUn (140985177-140985433)
               

               
               1-101, gnl|hg17|chr8 (144881092-144881354)
               

               
               1-101, gnl|Hg17|chr8 (144881257-144881157)
               

               
               1-101, gnl|mm7|chr15 (76085535-76085791)
               

               
               1-101, gnl|Mm7|chr15 (76085694-76085594)
               

               
               1-101, gnl|monDom2|scaffold_79 (1362275-1362537)
               

               
               1-101, gnl|panTro1|chr7 (148151309-148151571)
               

               
               1-101, gnl|rheMac2|chr8 (146353885-146354147)
               

               
               1-101, gnl|rn3|chr7 (114069901-114070157)
               

               
               1-101, gnl|xenTro1|scaffold_1790 (63460-63189)
               


               
               196-642, gnl|bosTau2|chr14 (278392-277924)
               

               
               196-642, gnl|Hg17|chr8 (144880279-144879782)
               

               
               196-642, gnl|Mm7|chr15 (76084605-76084076)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-101, gnl|bosTau2|chr14 (279364-279264)
               

               
               1-101, gnl|canFam2|chr13 (40356977-40357236)
               

               
               1-101, gnl|galGal2|chrUn (140985177-140985433)
               

               
               1-101, gnl|hg17|chr8 (144881092-144881354)
               

               
               1-101, gnl|Hg17|chr8 (144881257-144881157)
               

               
               1-101, gnl|mm7|chr15 (76085535-76085791)
               

               
               1-101, gnl|Mm7|chr15 (76085694-76085594)
               

               
               1-101, gnl|monDom2|scaffold_79 (1362275-1362537)
               

               
               1-101, gnl|panTro1|chr7 (148151309-148151571)
               

               
               1-101, gnl|rheMac2|chr8 (146353885-146354147)
               

               
               1-101, gnl|rn3|chr7 (114069901-114070157)
               

               
               1-101, gnl|xenTro1|scaffold_1790 (63460-63189)
               


               
               196-642, gnl|bosTau2|chr14 (278392-277924)
               

               
               196-642, gnl|Hg17|chr8 (144880279-144879782)
               

               
               196-642, gnl|Mm7|chr15 (76084605-76084076)

	1-101, gnl\|bosTau2\|chr14 (279364-279264)
	1-101, gnl\|canFam2\|chr13 (40356977-40357236)
	1-101, gnl\|galGal2\|chrUn (140985177-140985433)
	1-101, gnl\|hg17\|chr8 (144881092-144881354)
	1-101, gnl\|Hg17\|chr8 (144881257-144881157)
	1-101, gnl\|mm7\|chr15 (76085535-76085791)
	1-101, gnl\|Mm7\|chr15 (76085694-76085594)
	1-101, gnl\|monDom2\|scaffold_79 (1362275-1362537)
	1-101, gnl\|panTro1\|chr7 (148151309-148151571)
	1-101, gnl\|rheMac2\|chr8 (146353885-146354147)
	1-101, gnl\|rn3\|chr7 (114069901-114070157)
	1-101, gnl\|xenTro1\|scaffold_1790 (63460-63189)

	196-642, gnl\|bosTau2\|chr14 (278392-277924)
	196-642, gnl\|Hg17\|chr8 (144880279-144879782)
	196-642, gnl\|Mm7\|chr15 (76084605-76084076)