Non-Coding RNA Search

Ss1.1-Pig1-77E15.5

Sequence:


               
               CTGACAGACGTCAATGACAACCCTCCCCGGGTCCCCCAGAGTACCTACCAGTTTAAAACC
CCCGAATCCTCTCCACCGGGTACACCAATTGGCAGGATCAAAGCCAGTGATGCTGACATG
GGAGAAAATGCTGAAATTGAGTACAGCATTACAGAGGGAGAGGGGCTGGACATGTTTGAT
GTCATCACCGATCAGGAAACCCAGGAAGGGATTATAACTGTCAAAAAGATCTTAGACTTT
GAAAAGAAGAAAGTGTACACCCTCAAAGTGGAAGCCTCCAATCCTCACGTTGAACCCCGC
TTTCTCTACCTGGGTCCATTCAAAGATTCAGCCACAGTTAGAATTATGGTGGAAGATGTA
GACGAGCCCCCTGTCTTCAGCAAACTGGCCTACATCCTACAAATAAGAGAAGATGCTCAG
ATAAACACGACGATAGGTTCGGTCACAGCCCAAGATCCAGATGCTGCCAGGAATCCTGTC
AAGTATTCTGTCGATCGACACACAGATATGGACAGAATATTCAACATCGATTCTGGAAAT
GGTTCGATTTTTACATCGAAACTTCTTGACCGAGAAACATTGCTGTGGCACAACATTACA
GTGATAGCAACAGAGATCAATAATCCAAAGCAAAGCAGCCGCGTACCTCTATATATAAAG
TTCTAGATGTTAATGACAACCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACAGACGTCAATGACAACCCTCCCCGGGTCCCCCAGAGTACCTACCAGTTTAAAACC
CCCGAATCCTCTCCACCGGGTACACCAATTGGCAGGATCAAAGCCAGTGATGCTGACATG
GGAGAAAATGCTGAAATTGAGTACAGCATTACAGAGGGAGAGGGGCTGGACATGTTTGAT
GTCATCACCGATCAGGAAACCCAGGAAGGGATTATAACTGTCAAAAAGATCTTAGACTTT
GAAAAGAAGAAAGTGTACACCCTCAAAGTGGAAGCCTCCAATCCTCACGTTGAACCCCGC
TTTCTCTACCTGGGTCCATTCAAAGATTCAGCCACAGTTAGAATTATGGTGGAAGATGTA
GACGAGCCCCCTGTCTTCAGCAAACTGGCCTACATCCTACAAATAAGAGAAGATGCTCAG
ATAAACACGACGATAGGTTCGGTCACAGCCCAAGATCCAGATGCTGCCAGGAATCCTGTC
AAGTATTCTGTCGATCGACACACAGATATGGACAGAATATTCAACATCGATTCTGGAAAT
GGTTCGATTTTTACATCGAAACTTCTTGACCGAGAAACATTGCTGTGGCACAACATTACA
GTGATAGCAACAGAGATCAATAATCCAAAGCAAAGCAGCCGCGTACCTCTATATATAAAG
TTCTAGATGTTAATGACAACCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-199, + strand, RNAz p=0.657625

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, + strand, RNAz p=0.657625

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               41-245, gnl|bosTau2|chr20 (27639893-27639689)
               

               
               41-245, gnl|Hg17|chr5 (31337975-31338178)
               

               
               41-245, gnl|Mm7|chr15 (13112807-13112603)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-245, gnl|bosTau2|chr20 (27639893-27639689)
               

               
               41-245, gnl|Hg17|chr5 (31337975-31338178)
               

               
               41-245, gnl|Mm7|chr15 (13112807-13112603)

	41-245, gnl\|bosTau2\|chr20 (27639893-27639689)
	41-245, gnl\|Hg17\|chr5 (31337975-31338178)
	41-245, gnl\|Mm7\|chr15 (13112807-13112603)