Non-Coding RNA Search

Ss1.1-Pig1-78N17.5

Sequence:


               
               GCCACCTACAAGCAAACCTGTGGCCTCAACTCCCACTGAGCAGGTGCCGTCCCAAGAGAT
GCTACTGCCGGCGAGACTTCCACCACCTGCTGTACAGTCCATGCCCCCCACAGTGCCCAC
TGCTCTGCCTTTTCCCACAGGTGGCCTGGGCATGTCCCCCATGCTGCCTCTTCCCACAAG
TGGGCAAGGGGTCCCCAGTTTGCCCCCACCACCCTTGCAGCCTCCTAGTCTTCCGATGTC
TATGGGGCCAGTGCCACCTGATCCCTATACTCACTATGCCCCTGTGCCCCCTTGGCCTTG
TTATCCCCCTGTGTCCCCTTCTGGGTATCCTTGCCTACCCCCCCCACCAACAGTGCCCCT
TGTGTCTGGTACTCCTGGCACCTATGCTGTGCCCCCCACTTGCAATGTGCCTTGGGTGCC
TCCTCCTGCCACAGTTCCACCTTATAGCTCCAGCTGTACCTATGGGCCCTTGGGATGGGG
CCCAGGGCTGCAACACCCTCCATTCTGGCCTACTGTTCCCCCACCTCCTTTGCCTCTAAA
CTCTGCTGGGAGAGCTGTTCCTCAATCCAAGGTGGAGCCCAGTGGCATCCCAGTTGGCCC
TCCTGAAAATGTGCTAACTGTGCCAATGGCTCCTCCCCTCAGTCTTGGGGCAGCTGGCCA
GGGAGCTCCCCAAATAGAGCCCACCAAAGTGGAGGTCACACCGGTGCCTGCATGTCCCCA
TTCCAAACACAAGGTGTCCTCCCCGGTGCACAGCCCTCGGATTAAGGCTCCCCCATGTCT
GTCTGCTGAGAGTGTGGCTGTTGAGGAGCCTGCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACCTACAAGCAAACCTGTGGCCTCAACTCCCACTGAGCAGGTGCCGTCCCAAGAGAT
GCTACTGCCGGCGAGACTTCCACCACCTGCTGTACAGTCCATGCCCCCCACAGTGCCCAC
TGCTCTGCCTTTTCCCACAGGTGGCCTGGGCATGTCCCCCATGCTGCCTCTTCCCACAAG
TGGGCAAGGGGTCCCCAGTTTGCCCCCACCACCCTTGCAGCCTCCTAGTCTTCCGATGTC
TATGGGGCCAGTGCCACCTGATCCCTATACTCACTATGCCCCTGTGCCCCCTTGGCCTTG
TTATCCCCCTGTGTCCCCTTCTGGGTATCCTTGCCTACCCCCCCCACCAACAGTGCCCCT
TGTGTCTGGTACTCCTGGCACCTATGCTGTGCCCCCCACTTGCAATGTGCCTTGGGTGCC
TCCTCCTGCCACAGTTCCACCTTATAGCTCCAGCTGTACCTATGGGCCCTTGGGATGGGG
CCCAGGGCTGCAACACCCTCCATTCTGGCCTACTGTTCCCCCACCTCCTTTGCCTCTAAA
CTCTGCTGGGAGAGCTGTTCCTCAATCCAAGGTGGAGCCCAGTGGCATCCCAGTTGGCCC
TCCTGAAAATGTGCTAACTGTGCCAATGGCTCCTCCCCTCAGTCTTGGGGCAGCTGGCCA
GGGAGCTCCCCAAATAGAGCCCACCAAAGTGGAGGTCACACCGGTGCCTGCATGTCCCCA
TTCCAAACACAAGGTGTCCTCCCCGGTGCACAGCCCTCGGATTAAGGCTCCCCCATGTCT
GTCTGCTGAGAGTGTGGCTGTTGAGGAGCCTGCATC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-224, - strand, RNAz p=0.967217
               

               
               305-504, - strand, RNAz p=0.920513

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-224, - strand, RNAz p=0.967217
               

               
               305-504, - strand, RNAz p=0.920513

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               415-508, + strand, RNAmicro p=0.977015

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               415-508, + strand, RNAmicro p=0.977015

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-816, gnl|bosTau2|chr26 (15303560-15304375)
               

               
               1-816, gnl|Hg17|chr10 (103890751-103891545)
               

               
               1-816, gnl|Mm7|chr19 (45961081-45961908)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-816, gnl|bosTau2|chr26 (15303560-15304375)
               

               
               1-816, gnl|Hg17|chr10 (103890751-103891545)
               

               
               1-816, gnl|Mm7|chr19 (45961081-45961908)

	80-224, - strand, RNAz p=0.967217
	305-504, - strand, RNAz p=0.920513

	1-816, gnl\|bosTau2\|chr26 (15303560-15304375)
	1-816, gnl\|Hg17\|chr10 (103890751-103891545)
	1-816, gnl\|Mm7\|chr19 (45961081-45961908)