Non-Coding RNA Search

Ss1.1-Pig1-7H04.5

Sequence:


               
               TGGGTTGGTCCACTCTGATCGCAAGGGGTCTGGCATGAGGCTTTCTGTATCCAGTCACAG
CAGGGGCTCAGTGACCCAAATCATTGACAGCGCACAGACCCTGGCAGCAGAGATGGGGTA
GGTGGGAGGCACAATGACCCCCTGGACAAGAGGTCTCACCAAGGGCCCTGGCCCACCCAC
TACTCCTGCCTTCCCGTAGGTTGTCCTGAATTTCAATGGGACATCCCAAGAGCTGGTGAC
CGTGTCAGGGCACACACTGAACTGGCCCCTGGGGCATCCACCTCCTGATGTCCCCAGATG
CGGCTTTGACAATGAGGACCCAGCCTGCAACCAAGGTGACTGCCCCTGACCTTCCAGGCC
TCCATTCTGGAGGTGCTGCCCCCTTCCTGCTCTGGGAGTCACATAGGTGCTCCTCTCCCA
CACTTTCCTGGAGAGACTCCTGCCTTTTTCTTCCCTTCATCCATCATCCAAGTTCACTGA
TTGAATATTAAAAGGTTCTTCTCCTTGCTACCCAGTGTCTAACCAAAATCTCTCTTGCGG
TAACTTGGATTCTCTCCTGCAGACCACTTTTCCACCCTAGAGGTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGTTGGTCCACTCTGATCGCAAGGGGTCTGGCATGAGGCTTTCTGTATCCAGTCACAG
CAGGGGCTCAGTGACCCAAATCATTGACAGCGCACAGACCCTGGCAGCAGAGATGGGGTA
GGTGGGAGGCACAATGACCCCCTGGACAAGAGGTCTCACCAAGGGCCCTGGCCCACCCAC
TACTCCTGCCTTCCCGTAGGTTGTCCTGAATTTCAATGGGACATCCCAAGAGCTGGTGAC
CGTGTCAGGGCACACACTGAACTGGCCCCTGGGGCATCCACCTCCTGATGTCCCCAGATG
CGGCTTTGACAATGAGGACCCAGCCTGCAACCAAGGTGACTGCCCCTGACCTTCCAGGCC
TCCATTCTGGAGGTGCTGCCCCCTTCCTGCTCTGGGAGTCACATAGGTGCTCCTCTCCCA
CACTTTCCTGGAGAGACTCCTGCCTTTTTCTTCCCTTCATCCATCATCCAAGTTCACTGA
TTGAATATTAAAAGGTTCTTCTCCTTGCTACCCAGTGTCTAACCAAAATCTCTCTTGCGG
TAACTTGGATTCTCTCCTGCAGACCACTTTTCCACCCTAGAGGTGCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-274, + strand, RNAz p=0.992505

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-274, + strand, RNAz p=0.992505

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               126-191, - strand, RNAmicro p=0.974512

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               126-191, - strand, RNAmicro p=0.974512

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-499, gnl|bosTau2|chr3 (7921216-7921721)
               

               
               4-499, gnl|Hg17|chr1 (150468726-150469232)
               

               
               4-499, gnl|Mm7|chr3 (90592413-90591991)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-499, gnl|bosTau2|chr3 (7921216-7921721)
               

               
               4-499, gnl|Hg17|chr1 (150468726-150469232)
               

               
               4-499, gnl|Mm7|chr3 (90592413-90591991)

	4-499, gnl\|bosTau2\|chr3 (7921216-7921721)
	4-499, gnl\|Hg17\|chr1 (150468726-150469232)
	4-499, gnl\|Mm7\|chr3 (90592413-90591991)