Non-Coding RNA Search

Ss1.1-Pig1-80C11.5

Sequence:


               
               GCGGCCCTTCCCCTACCAAGTCCCTGCCCGCTGGCCTCTGGCCTTGAGTGAGTTCCCACC
ACCCTCCCCACTGGGAGTGTCCCTGCAGCTCTTGCTCATCCATGCTGCCTGCCCCCTGCC
CCCAGCTTTGGGCCTGTTTTCTTCTTGGGCTTCTTTCCAAGAAGCTGTCCCCTTGGCCCC
CAGGCTGGGGCCAGCTCTGTGCTCCTATACCTAACAAGCTCTCACCACTAGCTGGTGTAT
TTGCTTTGTTTTACCATGACCCCTCCAAACCACAAGCCCCTCAAGGCAGTGCTATGTCTC
ACCGCTCTGGTATCCAAGCCAGATATTTGATCAGTATTGGAGTGTGTTTAATCTCTGTGC
TGTGTGAGACACGTGTTTTTGGAGCTTCCCAGCTGTCCAGTGGGTGAGGCGAGGAAGGAG
GCAGCCATCAGTAGGCAGCATGCTGGGCCAGGCAGGGAGGCAGCCATCAGTAGGCAGTGT
GCTGGGATGGGCAGGGAGGCAGCCATCAGTAGGCAGCATGCTGGGCCAGGCAGGGAGGCA
GCCATCAGTAGGATGTGTGCTGGGATGGGCAGCAGTCATGTGAGTTGGGGGTGCCCTGGG
CTACTGACTGATGGAACTGGCCTTGTAGCCCCCAGAGGCACCCACCTGTGGGAGTTCATC
CGTGATATCCTCATCAACCCGGAGCTCAACGAGGGCCTCATGAAGTGGGAGAACCGGCAA
GAAGGTGTCTTCAAGTTCCTGCGCTCCGAGGCCGTGGCCCAGCTGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCCTTCCCCTACCAAGTCCCTGCCCGCTGGCCTCTGGCCTTGAGTGAGTTCCCACC
ACCCTCCCCACTGGGAGTGTCCCTGCAGCTCTTGCTCATCCATGCTGCCTGCCCCCTGCC
CCCAGCTTTGGGCCTGTTTTCTTCTTGGGCTTCTTTCCAAGAAGCTGTCCCCTTGGCCCC
CAGGCTGGGGCCAGCTCTGTGCTCCTATACCTAACAAGCTCTCACCACTAGCTGGTGTAT
TTGCTTTGTTTTACCATGACCCCTCCAAACCACAAGCCCCTCAAGGCAGTGCTATGTCTC
ACCGCTCTGGTATCCAAGCCAGATATTTGATCAGTATTGGAGTGTGTTTAATCTCTGTGC
TGTGTGAGACACGTGTTTTTGGAGCTTCCCAGCTGTCCAGTGGGTGAGGCGAGGAAGGAG
GCAGCCATCAGTAGGCAGCATGCTGGGCCAGGCAGGGAGGCAGCCATCAGTAGGCAGTGT
GCTGGGATGGGCAGGGAGGCAGCCATCAGTAGGCAGCATGCTGGGCCAGGCAGGGAGGCA
GCCATCAGTAGGATGTGTGCTGGGATGGGCAGCAGTCATGTGAGTTGGGGGTGCCCTGGG
CTACTGACTGATGGAACTGGCCTTGTAGCCCCCAGAGGCACCCACCTGTGGGAGTTCATC
CGTGATATCCTCATCAACCCGGAGCTCAACGAGGGCCTCATGAAGTGGGAGAACCGGCAA
GAAGGTGTCTTCAAGTTCCTGCGCTCCGAGGCCGTGGCCCAGCTGTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               155-274, - strand, RNAz p=0.948718

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-274, - strand, RNAz p=0.948718

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               113-452, gnl|bosTau2|chr16 (46874888-46875226)
               

               
               113-452, gnl|Mm7|chr1 (135145354-135144962)
               


               
               524-768, gnl|bosTau2|chr16 (46875182-46875425)
               

               
               524-768, gnl|Hg17|chr1 (198714545-198714753)
               

               
               524-768, gnl|Mm7|chr1 (135145057-135144766)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-452, gnl|bosTau2|chr16 (46874888-46875226)
               

               
               113-452, gnl|Mm7|chr1 (135145354-135144962)
               


               
               524-768, gnl|bosTau2|chr16 (46875182-46875425)
               

               
               524-768, gnl|Hg17|chr1 (198714545-198714753)
               

               
               524-768, gnl|Mm7|chr1 (135145057-135144766)

	113-452, gnl\|bosTau2\|chr16 (46874888-46875226)
	113-452, gnl\|Mm7\|chr1 (135145354-135144962)

	524-768, gnl\|bosTau2\|chr16 (46875182-46875425)
	524-768, gnl\|Hg17\|chr1 (198714545-198714753)
	524-768, gnl\|Mm7\|chr1 (135145057-135144766)