Non-Coding RNA Search

Ss1.1-Pig1-80E24.5

Sequence:


               
               CAAACTTTATGCCCAGGACAGAGGGCTGGCCTGATTGGGTCCACAGAAGGACCCCAAACC
CAGGCTCGCAGACCCATTCCTGCCACTCCCACTCTTCCTCCCTGGAGGGTGATCCAAGCA
GGGCTTTGGGGCCTCCAAATCCTTGTGGTCAATTCTGGCTCATTGCTGACCCTCAAAGAT
ATAAATACTGCAAGATGCATAAAGATGAGTGTTGGCCCAGCCACAACTCTCAAGGGGATC
TAAGACAGAAAAAGATGAGAGCCCTAAAGATGTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACTTTATGCCCAGGACAGAGGGCTGGCCTGATTGGGTCCACAGAAGGACCCCAAACC
CAGGCTCGCAGACCCATTCCTGCCACTCCCACTCTTCCTCCCTGGAGGGTGATCCAAGCA
GGGCTTTGGGGCCTCCAAATCCTTGTGGTCAATTCTGGCTCATTGCTGACCCTCAAAGAT
ATAAATACTGCAAGATGCATAAAGATGAGTGTTGGCCCAGCCACAACTCTCAAGGGGATC
TAAGACAGAAAAAGATGAGAGCCCTAAAGATGTGAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               41-157, - strand, RNAz p=0.660217

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-157, - strand, RNAz p=0.660217

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               1-276, gnl|bosTau2|chr10 (52208446-52208179)
               

               
               1-276, gnl|dasNov1|scaffold_219158 (454-224)
               

               
               1-276, gnl|hg17|chr14 (64293180-64293444)
               

               
               1-276, gnl|Hg17|chr14 (64293504-64293242)
               

               
               1-276, gnl|loxAfr1|scaffold_140311 (4958-5224)
               

               
               1-276, gnl|mm7|chr12 (74547575-74547825)
               

               
               1-276, gnl|Mm7|chr12 (74547889-74547636)
               

               
               1-276, gnl|oryCun1|scaffold_199733 (90220-90452)
               

               
               1-276, gnl|panTro1|chr15 (63862202-63862466)
               

               
               1-276, gnl|rheMac2|chr7 (127755195-127755462)
               

               
               1-276, gnl|rn3|chr6 (99188489-99188651)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-276, gnl|bosTau2|chr10 (52208446-52208179)
               

               
               1-276, gnl|dasNov1|scaffold_219158 (454-224)
               

               
               1-276, gnl|hg17|chr14 (64293180-64293444)
               

               
               1-276, gnl|Hg17|chr14 (64293504-64293242)
               

               
               1-276, gnl|loxAfr1|scaffold_140311 (4958-5224)
               

               
               1-276, gnl|mm7|chr12 (74547575-74547825)
               

               
               1-276, gnl|Mm7|chr12 (74547889-74547636)
               

               
               1-276, gnl|oryCun1|scaffold_199733 (90220-90452)
               

               
               1-276, gnl|panTro1|chr15 (63862202-63862466)
               

               
               1-276, gnl|rheMac2|chr7 (127755195-127755462)
               

               
               1-276, gnl|rn3|chr6 (99188489-99188651)

	1-276, gnl\|bosTau2\|chr10 (52208446-52208179)
	1-276, gnl\|dasNov1\|scaffold_219158 (454-224)
	1-276, gnl\|hg17\|chr14 (64293180-64293444)
	1-276, gnl\|Hg17\|chr14 (64293504-64293242)
	1-276, gnl\|loxAfr1\|scaffold_140311 (4958-5224)
	1-276, gnl\|mm7\|chr12 (74547575-74547825)
	1-276, gnl\|Mm7\|chr12 (74547889-74547636)
	1-276, gnl\|oryCun1\|scaffold_199733 (90220-90452)
	1-276, gnl\|panTro1\|chr15 (63862202-63862466)
	1-276, gnl\|rheMac2\|chr7 (127755195-127755462)
	1-276, gnl\|rn3\|chr6 (99188489-99188651)