Non-Coding RNA Search

Ss1.1-Pig1-80F06.5

Sequence:


               
               CGTGAACGCAGCTCGGCAGAGGCTGGCAGGAAACAATTCTGCAAAAATAATCATACTCAG
CCTGGCAATTGTCTACCCCTAGCTCTCTTGCTCTGCCGCCGTCCACACTCACGGCAAGGG
GGGGCAGAGAATTTACCGCGGCAAGAACATCCCTCCCGGCCAGCAGATTACAATGCTGCA
AACTAAGGATCTCATCTGGACTTTGTTTTTCCTGGGAACTGCAGTTTCTCTGCAGGTGGA
TATCGTTCCCAGCCAAGGGGAAATCAGCGTTGGAGAGTCCAAATTCTTCTTATGCCAAGT
GGCAGGAGATGCCAAAGATAAAGACATCTCCTGGTTCTCCCCCAATGGAGAAAAACTCAC
CCCGAACCAGCAGCGGATCTCCGTGGTGTGGAACGATGACTCCTCCTCCACCCTCACCAT
CTACAATGCCAACATCGACGATGCCGGCATTTACAAGTGCGTGGTCTCCGCGGAGGACGG
CACCGAGTCAGAGGCCACGGTCAATGTGAAGATCTTCCAGAAGCTCATTGTTCAAGAATG
CGCCGACCCCGCAGAGTTCAGGGAAGGGGGAAGATGCCGTGATTGTGTGCGATGTGGTCA
GCTCCCTCCCCCCAACCATCATCTGGAAACACAAAGGCCGNGATGTCATCCTGAAAAAAG
ATGTCCGATTCATCGTCCTGGGCAACAACTACCTCCAGAGTCAAGGGGCATCAAGAAAAC
AGATGNAGGGCACTTACCNGCTGTGCAGGGCAGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGAACGCAGCTCGGCAGAGGCTGGCAGGAAACAATTCTGCAAAAATAATCATACTCAG
CCTGGCAATTGTCTACCCCTAGCTCTCTTGCTCTGCCGCCGTCCACACTCACGGCAAGGG
GGGGCAGAGAATTTACCGCGGCAAGAACATCCCTCCCGGCCAGCAGATTACAATGCTGCA
AACTAAGGATCTCATCTGGACTTTGTTTTTCCTGGGAACTGCAGTTTCTCTGCAGGTGGA
TATCGTTCCCAGCCAAGGGGAAATCAGCGTTGGAGAGTCCAAATTCTTCTTATGCCAAGT
GGCAGGAGATGCCAAAGATAAAGACATCTCCTGGTTCTCCCCCAATGGAGAAAAACTCAC
CCCGAACCAGCAGCGGATCTCCGTGGTGTGGAACGATGACTCCTCCTCCACCCTCACCAT
CTACAATGCCAACATCGACGATGCCGGCATTTACAAGTGCGTGGTCTCCGCGGAGGACGG
CACCGAGTCAGAGGCCACGGTCAATGTGAAGATCTTCCAGAAGCTCATTGTTCAAGAATG
CGCCGACCCCGCAGAGTTCAGGGAAGGGGGAAGATGCCGTGATTGTGTGCGATGTGGTCA
GCTCCCTCCCCCCAACCATCATCTGGAAACACAAAGGCCGNGATGTCATCCTGAAAAAAG
ATGTCCGATTCATCGTCCTGGGCAACAACTACCTCCAGAGTCAAGGGGCATCAAGAAAAC
AGATGNAGGGCACTTACCNGCTGTGCAGGGCAGGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|2213924|gb|AAB61615.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2213924|gb|AAB61615.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               298-496, - strand, RNAz p=0.978366

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-496, - strand, RNAz p=0.978366

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-224, gnl|bosTau2|chr15 (9949197-9949422)
               

               
               1-224, gnl|canFam2|chr5 (23200958-23200483)
               

               
               1-224, gnl|dasNov1|scaffold_34015 (9000-8544)
               

               
               1-224, gnl|echTel1|scaffold_297863 (6019-6494)
               

               
               1-224, gnl|hg17|chr11 (112337136-112337608)
               

               
               1-224, gnl|Hg17|chr11 (112337371-112337596)
               

               
               1-224, gnl|mm7|chr9 (49774518-49774047)
               

               
               1-224, gnl|Mm7|chr9 (49774281-49774056)
               

               
               1-224, gnl|monDom2|scaffold_2 (128233319-128232845)
               

               
               1-224, gnl|oryCun1|scaffold_213463 (38665-39134)
               

               
               1-224, gnl|panTro1|chr9 (114339401-114339871)
               

               
               1-224, gnl|rheMac2|chr14 (111434336-111434812)
               

               
               1-224, gnl|rn3|chr8 (53139827-53139357)
               

               
               1-224, gnl|xenTro1|scaffold_484 (950341-950896)
               


               
               298-523, gnl|bosTau2|chr15 (10125967-10126192)
               

               
               298-523, gnl|Hg17|chr11 (112580216-112580441)
               

               
               298-523, gnl|Mm7|chr9 (49543792-49543567)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-224, gnl|bosTau2|chr15 (9949197-9949422)
               

               
               1-224, gnl|canFam2|chr5 (23200958-23200483)
               

               
               1-224, gnl|dasNov1|scaffold_34015 (9000-8544)
               

               
               1-224, gnl|echTel1|scaffold_297863 (6019-6494)
               

               
               1-224, gnl|hg17|chr11 (112337136-112337608)
               

               
               1-224, gnl|Hg17|chr11 (112337371-112337596)
               

               
               1-224, gnl|mm7|chr9 (49774518-49774047)
               

               
               1-224, gnl|Mm7|chr9 (49774281-49774056)
               

               
               1-224, gnl|monDom2|scaffold_2 (128233319-128232845)
               

               
               1-224, gnl|oryCun1|scaffold_213463 (38665-39134)
               

               
               1-224, gnl|panTro1|chr9 (114339401-114339871)
               

               
               1-224, gnl|rheMac2|chr14 (111434336-111434812)
               

               
               1-224, gnl|rn3|chr8 (53139827-53139357)
               

               
               1-224, gnl|xenTro1|scaffold_484 (950341-950896)
               


               
               298-523, gnl|bosTau2|chr15 (10125967-10126192)
               

               
               298-523, gnl|Hg17|chr11 (112580216-112580441)
               

               
               298-523, gnl|Mm7|chr9 (49543792-49543567)

	1-224, gnl\|bosTau2\|chr15 (9949197-9949422)
	1-224, gnl\|canFam2\|chr5 (23200958-23200483)
	1-224, gnl\|dasNov1\|scaffold_34015 (9000-8544)
	1-224, gnl\|echTel1\|scaffold_297863 (6019-6494)
	1-224, gnl\|hg17\|chr11 (112337136-112337608)
	1-224, gnl\|Hg17\|chr11 (112337371-112337596)
	1-224, gnl\|mm7\|chr9 (49774518-49774047)
	1-224, gnl\|Mm7\|chr9 (49774281-49774056)
	1-224, gnl\|monDom2\|scaffold_2 (128233319-128232845)
	1-224, gnl\|oryCun1\|scaffold_213463 (38665-39134)
	1-224, gnl\|panTro1\|chr9 (114339401-114339871)
	1-224, gnl\|rheMac2\|chr14 (111434336-111434812)
	1-224, gnl\|rn3\|chr8 (53139827-53139357)
	1-224, gnl\|xenTro1\|scaffold_484 (950341-950896)

	298-523, gnl\|bosTau2\|chr15 (10125967-10126192)
	298-523, gnl\|Hg17\|chr11 (112580216-112580441)
	298-523, gnl\|Mm7\|chr9 (49543792-49543567)