Non-Coding RNA Search

Ss1.1-Pig1-80M23.5

Sequence:


               
               CGCACCATCCCCTGGGGAGGCCGAGGCTTCAGCTGCACTGCTTTTGTGTGGTTCCCAAAG
TCTGCAAAGACTCCTAGCTNTGGAGCCCAGTGCAGCTCATCCAGGCTCTCCTCAGCTTCC
AGTGAGACAGCCAATGGGCCCAGCTTTGCAGNTGCCTCAGCCTCTCCCAGNTGCTTTGCC
AGCCGCATCAACACACGGGCACCCAGTGCCACCCAGCATCGCAGGTCCAGGTGCCGCTCA
GTAGCTGAAGGGTGTGAAGCCCGGGGATAGTCATCCAGCCCTGAAGGCAGCGTCTTGGGG
TTCAGTAAGGTTGGCAAGGCTGGGTCCCGGCCCCGCCAGCGGTAAGAGAGTGGTACCGGC
CCTGCCTGGCTCTGATGAAGCCAGGAGAACCAGGCATGCAGGCGGGGGAAGGCCCTGCGA
AGGAAGGCAAGGTCGGCAGGGTCACCACCCTCTAGCATGTGGGCTACAGGCAAAAGCAGG
GTTGGGGGGTTGGCGTGGGCGGTCCGTTGCACCAGGAACTCTGGGGGCACCCGGGCTCGG
GCCTCATCCCCCAGTATCTGCTCCCGCCCAATCCAACCGTCAGCATTGAGCAGCCCCAGC
CAGTGGCCTAGGGCCTCCCGGGTGAGTCTGGGATCCCACCGCTGGACCACCAGCTGGTGA
AAGCCCTCATCCCAAAGGAAGCCTCGCGGGAAGAATGACCGGGAGGGCACTGCTGTGAAG
AGAGGGACAGGTGGAAAGAGGACTGGGTCCACCTTCTGCTCAGACCCTGCAACCCCCACG
TCTGGCAACACCAGACCCTGTCCATAGAAGTAGCCAATACCACCAAGAAGGCCACTGAGG
GCAGCCTGGCCCAAAGCCTGCTCCTCAGGGCTCAGGCCCTTCTCCTTTAGCCGGAAGGTC
TTCTCAAAGCGCTTTCTAAAGGTTTCAGCATGGCTTTCCAGGGCCTGGGTCAGCAGACTG
CCTGCCAGCTGCTTCAAGGCTTGACTTCCTCCTGCCCGGGCACTGCCTGATTCAAACACG
AACTCCACGGAAAAGGGGACTTTCAGTGTCACCTGTTGTATCAAGAATTGCCCTTGTCCC
TGTCGTTGCCCACTTGGGCCTCTGTCTTCCCACTTCAGAGATCCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACCATCCCCTGGGGAGGCCGAGGCTTCAGCTGCACTGCTTTTGTGTGGTTCCCAAAG
TCTGCAAAGACTCCTAGCTNTGGAGCCCAGTGCAGCTCATCCAGGCTCTCCTCAGCTTCC
AGTGAGACAGCCAATGGGCCCAGCTTTGCAGNTGCCTCAGCCTCTCCCAGNTGCTTTGCC
AGCCGCATCAACACACGGGCACCCAGTGCCACCCAGCATCGCAGGTCCAGGTGCCGCTCA
GTAGCTGAAGGGTGTGAAGCCCGGGGATAGTCATCCAGCCCTGAAGGCAGCGTCTTGGGG
TTCAGTAAGGTTGGCAAGGCTGGGTCCCGGCCCCGCCAGCGGTAAGAGAGTGGTACCGGC
CCTGCCTGGCTCTGATGAAGCCAGGAGAACCAGGCATGCAGGCGGGGGAAGGCCCTGCGA
AGGAAGGCAAGGTCGGCAGGGTCACCACCCTCTAGCATGTGGGCTACAGGCAAAAGCAGG
GTTGGGGGGTTGGCGTGGGCGGTCCGTTGCACCAGGAACTCTGGGGGCACCCGGGCTCGG
GCCTCATCCCCCAGTATCTGCTCCCGCCCAATCCAACCGTCAGCATTGAGCAGCCCCAGC
CAGTGGCCTAGGGCCTCCCGGGTGAGTCTGGGATCCCACCGCTGGACCACCAGCTGGTGA
AAGCCCTCATCCCAAAGGAAGCCTCGCGGGAAGAATGACCGGGAGGGCACTGCTGTGAAG
AGAGGGACAGGTGGAAAGAGGACTGGGTCCACCTTCTGCTCAGACCCTGCAACCCCCACG
TCTGGCAACACCAGACCCTGTCCATAGAAGTAGCCAATACCACCAAGAAGGCCACTGAGG
GCAGCCTGGCCCAAAGCCTGCTCCTCAGGGCTCAGGCCCTTCTCCTTTAGCCGGAAGGTC
TTCTCAAAGCGCTTTCTAAAGGTTTCAGCATGGCTTTCCAGGGCCTGGGTCAGCAGACTG
CCTGCCAGCTGCTTCAAGGCTTGACTTCCTCCTGCCCGGGCACTGCCTGATTCAAACACG
AACTCCACGGAAAAGGGGACTTTCAGTGTCACCTGTTGTATCAAGAATTGCCCTTGTCCC
TGTCGTTGCCCACTTGGGCCTCTGTCTTCCCACTTCAGAGATCCTGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61883583|ref|XP_594296.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883583|ref|XP_594296.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-119, - strand, RNAz p=0.940589
               

               
               320-479, - strand, RNAz p=0.958892
               

               
               560-959, - strand, RNAz p=0.970365

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.940589
               

               
               320-479, - strand, RNAz p=0.958892
               

               
               560-959, - strand, RNAz p=0.970365

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1128, gnl|bosTau2|chr11 (7817343-7816216)
               

               
               1-1128, gnl|Hg17|chr2 (74600550-74601671)
               

               
               1-1128, gnl|Mm7|chr6 (83143649-83142534)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1128, gnl|bosTau2|chr11 (7817343-7816216)
               

               
               1-1128, gnl|Hg17|chr2 (74600550-74601671)
               

               
               1-1128, gnl|Mm7|chr6 (83143649-83142534)

	1-119, - strand, RNAz p=0.940589
	320-479, - strand, RNAz p=0.958892
	560-959, - strand, RNAz p=0.970365

	1-1128, gnl\|bosTau2\|chr11 (7817343-7816216)
	1-1128, gnl\|Hg17\|chr2 (74600550-74601671)
	1-1128, gnl\|Mm7\|chr6 (83143649-83142534)