Non-Coding RNA Search

Ss1.1-Pig1-81I14.5

Sequence:


               
               GGGACCCGCCTCGGTGCCTGGGCAGCAGGTGACACATGCTGTCCCTGAGAAGCCCAGAGG
AGAAGGGGCATTCTTTTGGCCAAGCCCCACCTGCCCCTCTTCTCCAAGCCGCCTGGGGGA
GCTGTGCGCTGGACCCTCACAGAGGTTCAGGGCCCAAGCACTGATTCGGAACCCATGGTT
TTTGGTTTTTAAGTTAATTCATTTTGCACAAAACTCCCAAACAACCAAAACATGTCAAGT
GTTTGCTGGTGGCAGAATGCAGGGGGGCCGCCTGGGCAGGGCAGCACGGCAAGCCCCAAG
TCCCCTCTCTGCCCGTGGAAGGCCTCGGGTTTTCCGTAGTGCACCTCTCCCAGCCCCTTC
CTGTCCATTCCCCTCGCCGTGTCACCTCTCTGCCCCGTCGAGCAAGTGTGTCGGCCCCTT
GACCCCCCCAGAAACGTGTGCTCCCCCTCCCCATAGGACGTATATTGTACACACCTATAA
ATAGTTGTGTTTTATGTTGATATAGATATATACTGTAAATAGCATATATACTTGAGCAAT
ATATATGTTAATATATACTGCGTGAGTGCACACGTGTGCGTGTGTGTGTGTGTGTGTGGA
CGTGAGGGCCTTCGCTCCGCTGTGTCTGCCGTGCACACAGGCACGTTTTGAGCCACCGTG
TATTTTTAATTCAAGTATATAGGCAATACGATTATTAGAGACGCCGGCTGGCTCATGGGC
CCTGACTTGAGAGAAAAAATAAACCAGCAGCCCAGGACTTGAGCCATGGGGCGGGTTCCG
GGAGTCCCTACCCCCTCCTCCCCCAGTCTCCCCCAAACGCTGGATTCGGCCCCTTCCCAT
GGGCAGGGCCCCTGGACACGCTTATCTTATTGGGGGGCAGTGGAACAGAGGGAGGAGCCG
CTGGGTCAGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACCCGCCTCGGTGCCTGGGCAGCAGGTGACACATGCTGTCCCTGAGAAGCCCAGAGG
AGAAGGGGCATTCTTTTGGCCAAGCCCCACCTGCCCCTCTTCTCCAAGCCGCCTGGGGGA
GCTGTGCGCTGGACCCTCACAGAGGTTCAGGGCCCAAGCACTGATTCGGAACCCATGGTT
TTTGGTTTTTAAGTTAATTCATTTTGCACAAAACTCCCAAACAACCAAAACATGTCAAGT
GTTTGCTGGTGGCAGAATGCAGGGGGGCCGCCTGGGCAGGGCAGCACGGCAAGCCCCAAG
TCCCCTCTCTGCCCGTGGAAGGCCTCGGGTTTTCCGTAGTGCACCTCTCCCAGCCCCTTC
CTGTCCATTCCCCTCGCCGTGTCACCTCTCTGCCCCGTCGAGCAAGTGTGTCGGCCCCTT
GACCCCCCCAGAAACGTGTGCTCCCCCTCCCCATAGGACGTATATTGTACACACCTATAA
ATAGTTGTGTTTTATGTTGATATAGATATATACTGTAAATAGCATATATACTTGAGCAAT
ATATATGTTAATATATACTGCGTGAGTGCACACGTGTGCGTGTGTGTGTGTGTGTGTGGA
CGTGAGGGCCTTCGCTCCGCTGTGTCTGCCGTGCACACAGGCACGTTTTGAGCCACCGTG
TATTTTTAATTCAAGTATATAGGCAATACGATTATTAGAGACGCCGGCTGGCTCATGGGC
CCTGACTTGAGAGAAAAAATAAACCAGCAGCCCAGGACTTGAGCCATGGGGCGGGTTCCG
GGAGTCCCTACCCCCTCCTCCCCCAGTCTCCCCCAAACGCTGGATTCGGCCCCTTCCCAT
GGGCAGGGCCCCTGGACACGCTTATCTTATTGGGGGGCAGTGGAACAGAGGGAGGAGCCG
CTGGGTCAGAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               458-678, - strand, RNAz p=0.99991

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               458-678, - strand, RNAz p=0.99991

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               118-912, gnl|bosTau2|chr25 (28916859-28916061)
               

               
               118-912, gnl|Hg17|chr7 (74450354-74449565)
               

               
               118-912, gnl|Mm7|chr5 (133389005-133389770)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-912, gnl|bosTau2|chr25 (28916859-28916061)
               

               
               118-912, gnl|Hg17|chr7 (74450354-74449565)
               

               
               118-912, gnl|Mm7|chr5 (133389005-133389770)

	118-912, gnl\|bosTau2\|chr25 (28916859-28916061)
	118-912, gnl\|Hg17\|chr7 (74450354-74449565)
	118-912, gnl\|Mm7\|chr5 (133389005-133389770)