Non-Coding RNA Search

Ss1.1-Pig1-81K21.5

Sequence:


               
               GTCAGAGAAGTCGGTGGGGAGGCGTGTGGCCCTCATGTCATGGGCTCTGGTACCCGCTCC
CTGCTATCTTTCTAGCCAAGGCCCAGGGTGCTGTATACTCCTGCCTTGTGTGTGGTTGAT
CTTCAGTTGGGGTTCACCTTTCAGAGCAGTTTATTCCTTTTTTTATTTGTTAAAACAAGC
ATTTGAGTTCAGCTATTGAATAGCCTTACAGAAAACTAACTCAGCCTTGCAGGTAAATAC
TGGACTAAAACTTTAACCCTGCAGCTTTTAGCCTTTGCCTTTATCCAGACTATAAGCCCA
CACACATAAGATGAAATTGAGAGACACTAAGTGTTGTGTGTGTTGTGAATGTTAAATTGT
TAACTATATGGTTATCTGCAGGGCTGATGTCTGCATATTGTTGAAAGACAACCATAATCT
TCTACATAACTGTGTTAAGGGAGATTTTACAAGTAGAGATTCTAGGGTAGAATGACAAAT
TATATTTTATATTCAGTTGTCTCTTCTGCTTCCATCTGCATTTCTCTCTTAGCTAAGAGA
GAGCCATTTGACGGTTTTAAGTCAGTGGAAACTTATTTTTAGTTACTCAATAAAATTAAT
TTTTAATTTGTATATTTAACTTACAGAGTAGGTTGGTAATAACAGCTGAACTGTGTAACA
TTGTTGCTTCAAATTGAAGTTTCTATTATGAACATTCAGAACCAGTGCTCATATAGCAGC
ATATTATGGAGCTATTTTGAGTTGGAACAGTAGAGAAGCCTAAACCTCGTGCTGTGTGTC
ACGTACCCCAACACCGGAGCACGATGCCTTCTTGGCATGGCTCCAGCCCCGCACAAGAGG
CTGCAGGACAATAGGGACAGGGGGTCTGTTCCGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGAGAAGTCGGTGGGGAGGCGTGTGGCCCTCATGTCATGGGCTCTGGTACCCGCTCC
CTGCTATCTTTCTAGCCAAGGCCCAGGGTGCTGTATACTCCTGCCTTGTGTGTGGTTGAT
CTTCAGTTGGGGTTCACCTTTCAGAGCAGTTTATTCCTTTTTTTATTTGTTAAAACAAGC
ATTTGAGTTCAGCTATTGAATAGCCTTACAGAAAACTAACTCAGCCTTGCAGGTAAATAC
TGGACTAAAACTTTAACCCTGCAGCTTTTAGCCTTTGCCTTTATCCAGACTATAAGCCCA
CACACATAAGATGAAATTGAGAGACACTAAGTGTTGTGTGTGTTGTGAATGTTAAATTGT
TAACTATATGGTTATCTGCAGGGCTGATGTCTGCATATTGTTGAAAGACAACCATAATCT
TCTACATAACTGTGTTAAGGGAGATTTTACAAGTAGAGATTCTAGGGTAGAATGACAAAT
TATATTTTATATTCAGTTGTCTCTTCTGCTTCCATCTGCATTTCTCTCTTAGCTAAGAGA
GAGCCATTTGACGGTTTTAAGTCAGTGGAAACTTATTTTTAGTTACTCAATAAAATTAAT
TTTTAATTTGTATATTTAACTTACAGAGTAGGTTGGTAATAACAGCTGAACTGTGTAACA
TTGTTGCTTCAAATTGAAGTTTCTATTATGAACATTCAGAACCAGTGCTCATATAGCAGC
ATATTATGGAGCTATTTTGAGTTGGAACAGTAGAGAAGCCTAAACCTCGTGCTGTGTGTC
ACGTACCCCAACACCGGAGCACGATGCCTTCTTGGCATGGCTCCAGCCCCGCACAAGAGG
CTGCAGGACAATAGGGACAGGGGGTCTGTTCCGTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               442-757, + strand, RNAz p=0.969704

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               442-757, + strand, RNAz p=0.969704

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-802, gnl|bosTau2|chr11 (6813175-6813974)
               

               
               6-802, gnl|Hg17|chr2 (105421814-105422599)
               

               
               6-802, gnl|Mm7|chr1 (43354492-43355288)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-802, gnl|bosTau2|chr11 (6813175-6813974)
               

               
               6-802, gnl|Hg17|chr2 (105421814-105422599)
               

               
               6-802, gnl|Mm7|chr1 (43354492-43355288)

	6-802, gnl\|bosTau2\|chr11 (6813175-6813974)
	6-802, gnl\|Hg17\|chr2 (105421814-105422599)
	6-802, gnl\|Mm7\|chr1 (43354492-43355288)