Non-Coding RNA Search

Ss1.1-Pig1-82I14.5

Sequence:


               
               AACAACAACAGCAAGAGGAGTTGTCTCTGACGACTTTCGAGCATGACGCTATCTTTGGGA
TCCTTAACAAAGTGAAGCCTTCCTACAAGTCCTGCGCCGAATGCATGTACCCTCCAGCCA
GCGGGCCTCCTGAGGCCCCCGGGGAGCGAGGCAAGAACCCCAGCACTCCTGCCATCTGCA
TCCAGCCCACCTTCCTGCCCCACCTCGGGTCTCCCCCCATGGCCCACTTGTCTAGCAGGT
CCCGAGCTTCGGAGAAAATGGCCTCTGGCCCAACCGAAGCACCCCCATTCCCGCCACCAG
GAGGCTCAAGGAGGCCAGACAGTGGGGGTTCTGGGGCAGGTGCTGCCCCAGAGCTGCCAG
CCAGCCTTTTGGAACCTTCCAGAGAGACTCATAAAGTCCTACCAAAGTCCCTCCTCTTGA
AGAATTCTCACTGTGATAAGAACCCTCCCACCATGGAAGTAGCAAAGGAGGAATCGCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAACAACAGCAAGAGGAGTTGTCTCTGACGACTTTCGAGCATGACGCTATCTTTGGGA
TCCTTAACAAAGTGAAGCCTTCCTACAAGTCCTGCGCCGAATGCATGTACCCTCCAGCCA
GCGGGCCTCCTGAGGCCCCCGGGGAGCGAGGCAAGAACCCCAGCACTCCTGCCATCTGCA
TCCAGCCCACCTTCCTGCCCCACCTCGGGTCTCCCCCCATGGCCCACTTGTCTAGCAGGT
CCCGAGCTTCGGAGAAAATGGCCTCTGGCCCAACCGAAGCACCCCCATTCCCGCCACCAG
GAGGCTCAAGGAGGCCAGACAGTGGGGGTTCTGGGGCAGGTGCTGCCCCAGAGCTGCCAG
CCAGCCTTTTGGAACCTTCCAGAGAGACTCATAAAGTCCTACCAAAGTCCCTCCTCTTGA
AGAATTCTCACTGTGATAAGAACCCTCCCACCATGGAAGTAGCAAAGGAGGAATCGCCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               231-480, - strand, RNAz p=0.998081

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-480, - strand, RNAz p=0.998081

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               298-396, - strand, RNAmicro p=0.999997
               

               
               94-272, - strand, RNAmicro p=0.986274

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               298-396, - strand, RNAmicro p=0.999997
               

               
               94-272, - strand, RNAmicro p=0.986274

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               34-480, gnl|bosTau2|chr17 (35074837-35074401)
               

               
               34-480, gnl|Hg17|chr12 (107685498-107685045)
               

               
               34-480, gnl|Mm7|chr5 (113165323-113164875)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-480, gnl|bosTau2|chr17 (35074837-35074401)
               

               
               34-480, gnl|Hg17|chr12 (107685498-107685045)
               

               
               34-480, gnl|Mm7|chr5 (113165323-113164875)

	298-396, - strand, RNAmicro p=0.999997
	94-272, - strand, RNAmicro p=0.986274

	34-480, gnl\|bosTau2\|chr17 (35074837-35074401)
	34-480, gnl\|Hg17\|chr12 (107685498-107685045)
	34-480, gnl\|Mm7\|chr5 (113165323-113164875)