Non-Coding RNA Search

Ss1.1-Pig1-82O23.5

Sequence:


               
               AGAAAAGCCTCCCAGGCTGCCAGTTTGTGCACTGGGGACTTAGGGGTGCATGCTCCAAAT
TGAGGCACTCAGGAATGAGGCCACTTTAGCAGAAAGATGTTTCTGGTGGGGGATCCTAGA
TCCTCAAGCCAGTTGTACTTCCTGTCTGGTCATTTCACCTCAGGGCCACAGTAGAGAATT
CAGATCCTGAGCTAACTGCCCATTGCAGACCAGGAGCTCAGAGGAGGACAGGGGTGAGCT
CAGAGTGTGCCAGGGGTGTTGGGTCAGAGCTGGGGCCAGAAGCTGGAACTCCATACTCCC
CACTTAGTAACTCTTCTTTGCCTCATCACTTTTCTCACCATTTGTAGAGAGAAGAAAAAA
CAAAGCCCCAGAGGGAGAAAGGGGATTACCCAAAGTAATGTGAGTCAGGGACAGGGCTGG
CAGTGCACTCAGATGCCCCTTGGGACCTGGAGCCATTGTGGGGGCAGCCCACACGTGCAC
ACATATACTCAGAGAAGCCGTGCAGGTGAGGGGAGGATGGGCATGGTGCTGTCTCTAGGT
CATATATGGACTTAGGAGCTGCTGCCCAGCAGGCCAGCCTGGAGGGAGAAGGGCCCAGCC
CGGCCCTGATCCAGTTGGAAAGTGTGACTCAGCCCTGCTGTTGCTCGAATTGCCTGGTGT
TTGGCCTGTCACTGGGGCAGCTGGAGTCCTGAGCCGTGAGCCCCGGTGTAAACAATGGCT
TTATAAGGTCTCCAGGGAAGACACCGGAGTTGGGAGGGAGCTCCACATTGGGGGAGGCCA
GGATCCCTGGGGAGATGGCCACAGCTGGAAGAAGCTGCTGAGAGAGGCTGCCTCCTTGTC
ATAGCACAGCTGGTGAAACAAGCCCAGTGCCAGAGACGACCCTAAGGGCACATAGCACAT
CAGCAGCAGAGTCAGGAACCTCTCACTCATCCTCAGTGCTTTCCAAGGACTCCAGGGAGG
TAAAGAATGACTATACTGTTTCTACAAAGATGGGGAAACTGAATCACAGGGCAGGGTTTT
CTCTAGCTTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAAGCCTCCCAGGCTGCCAGTTTGTGCACTGGGGACTTAGGGGTGCATGCTCCAAAT
TGAGGCACTCAGGAATGAGGCCACTTTAGCAGAAAGATGTTTCTGGTGGGGGATCCTAGA
TCCTCAAGCCAGTTGTACTTCCTGTCTGGTCATTTCACCTCAGGGCCACAGTAGAGAATT
CAGATCCTGAGCTAACTGCCCATTGCAGACCAGGAGCTCAGAGGAGGACAGGGGTGAGCT
CAGAGTGTGCCAGGGGTGTTGGGTCAGAGCTGGGGCCAGAAGCTGGAACTCCATACTCCC
CACTTAGTAACTCTTCTTTGCCTCATCACTTTTCTCACCATTTGTAGAGAGAAGAAAAAA
CAAAGCCCCAGAGGGAGAAAGGGGATTACCCAAAGTAATGTGAGTCAGGGACAGGGCTGG
CAGTGCACTCAGATGCCCCTTGGGACCTGGAGCCATTGTGGGGGCAGCCCACACGTGCAC
ACATATACTCAGAGAAGCCGTGCAGGTGAGGGGAGGATGGGCATGGTGCTGTCTCTAGGT
CATATATGGACTTAGGAGCTGCTGCCCAGCAGGCCAGCCTGGAGGGAGAAGGGCCCAGCC
CGGCCCTGATCCAGTTGGAAAGTGTGACTCAGCCCTGCTGTTGCTCGAATTGCCTGGTGT
TTGGCCTGTCACTGGGGCAGCTGGAGTCCTGAGCCGTGAGCCCCGGTGTAAACAATGGCT
TTATAAGGTCTCCAGGGAAGACACCGGAGTTGGGAGGGAGCTCCACATTGGGGGAGGCCA
GGATCCCTGGGGAGATGGCCACAGCTGGAAGAAGCTGCTGAGAGAGGCTGCCTCCTTGTC
ATAGCACAGCTGGTGAAACAAGCCCAGTGCCAGAGACGACCCTAAGGGCACATAGCACAT
CAGCAGCAGAGTCAGGAACCTCTCACTCATCCTCAGTGCTTTCCAAGGACTCCAGGGAGG
TAAAGAATGACTATACTGTTTCTACAAAGATGGGGAAACTGAATCACAGGGCAGGGTTTT
CTCTAGCTTCCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               10-117, - strand, RNAz p=0.874763
               

               
               595-712, - strand, RNAz p=0.852501

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-117, - strand, RNAz p=0.874763
               

               
               595-712, - strand, RNAz p=0.852501

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               79-177, + strand, RNAmicro p=0.994154
               

               
               706-795, + strand, RNAmicro p=0.961618
               

               
               82-157, - strand, RNAmicro p=0.902379

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               79-177, + strand, RNAmicro p=0.994154
               

               
               706-795, + strand, RNAmicro p=0.961618
               

               
               82-157, - strand, RNAmicro p=0.902379

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-1032, gnl|bosTau2|chr17 (44274234-44273199)
               

               
               10-1032, gnl|Hg17|chr22 (29822540-29823595)
               

               
               10-1032, gnl|Mm7|chr11 (3472073-3471031)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-1032, gnl|bosTau2|chr17 (44274234-44273199)
               

               
               10-1032, gnl|Hg17|chr22 (29822540-29823595)
               

               
               10-1032, gnl|Mm7|chr11 (3472073-3471031)

	10-117, - strand, RNAz p=0.874763
	595-712, - strand, RNAz p=0.852501

	79-177, + strand, RNAmicro p=0.994154
	706-795, + strand, RNAmicro p=0.961618
	82-157, - strand, RNAmicro p=0.902379

	10-1032, gnl\|bosTau2\|chr17 (44274234-44273199)
	10-1032, gnl\|Hg17\|chr22 (29822540-29823595)
	10-1032, gnl\|Mm7\|chr11 (3472073-3471031)