Non-Coding RNA Search

Ss1.1-Pig1-83O11.5

Sequence:


               
               TTCACACAAAAGAACATCCTGCTGGTGCACTACAATTCTGTCTCCCACCTGCATAAGTTA
AAGAGAGCCCTTCAAGAGTCAGCAACGGGTCAGCCAGAACCCACCAGCAGCCCCGACAAC
AAGCCTTTCAAGTGCAACACCTGTAACGTGGCCTACAGCCAGAGCTCCACTTTGGAGATC
CACATGCGGTCTGTGCTGCATCAGACCAAGGCCCGGGCAGCCAAGCTGGAGGCTGCCAGT
GGCAGTAGCAACGGCACTGGGAACAGCAGCAGTGTCTCCCTGAGCTCTTCCACCCCAAGT
CCTGTGAGTACCAGTGGCAGTAACACCTTTACCACCGCCAATCCAAGCAGTGCTGGCATC
GCTCCAAGCTCCAATTTACTGAGCCAAGTGCCCACTGAAAGTGTGGGAATGCCGCCCCTG
GGGAATCCCGTAGGTGCCAACATTGCTTCCCCTTCTGAGCCCAAGGAGGCCAATCGGAAG
AAGCTGGCAGATATGATTGCATCCAGGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG
CAACAGCAACAACAGCAGCAGCAACAACAAGCACAGACACTGGCCCAGGCCCAGGCTCAA
GTTCAAGCTCATCTGCAGCAGGAGCTGCAGCAGCAGGCGGCCCTGATCCAGTCCCATCTG
TTTAACCCCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCACACAAAAGAACATCCTGCTGGTGCACTACAATTCTGTCTCCCACCTGCATAAGTTA
AAGAGAGCCCTTCAAGAGTCAGCAACGGGTCAGCCAGAACCCACCAGCAGCCCCGACAAC
AAGCCTTTCAAGTGCAACACCTGTAACGTGGCCTACAGCCAGAGCTCCACTTTGGAGATC
CACATGCGGTCTGTGCTGCATCAGACCAAGGCCCGGGCAGCCAAGCTGGAGGCTGCCAGT
GGCAGTAGCAACGGCACTGGGAACAGCAGCAGTGTCTCCCTGAGCTCTTCCACCCCAAGT
CCTGTGAGTACCAGTGGCAGTAACACCTTTACCACCGCCAATCCAAGCAGTGCTGGCATC
GCTCCAAGCTCCAATTTACTGAGCCAAGTGCCCACTGAAAGTGTGGGAATGCCGCCCCTG
GGGAATCCCGTAGGTGCCAACATTGCTTCCCCTTCTGAGCCCAAGGAGGCCAATCGGAAG
AAGCTGGCAGATATGATTGCATCCAGGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG
CAACAGCAACAACAGCAGCAGCAACAACAAGCACAGACACTGGCCCAGGCCCAGGCTCAA
GTTCAAGCTCATCTGCAGCAGGAGCTGCAGCAGCAGGCGGCCCTGATCCAGTCCCATCTG
TTTAACCCCGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-239, - strand, RNAz p=0.931838

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, - strand, RNAz p=0.931838

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-546, gnl|bosTau2|chr18 (33581198-33581743)
               

               
               1-546, gnl|Hg17|chr16 (71389422-71388853)
               

               
               1-546, gnl|Mm7|chr8 (107547152-107547706)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-546, gnl|bosTau2|chr18 (33581198-33581743)
               

               
               1-546, gnl|Hg17|chr16 (71389422-71388853)
               

               
               1-546, gnl|Mm7|chr8 (107547152-107547706)

	1-546, gnl\|bosTau2\|chr18 (33581198-33581743)
	1-546, gnl\|Hg17\|chr16 (71389422-71388853)
	1-546, gnl\|Mm7\|chr8 (107547152-107547706)