Non-Coding RNA Search

Ss1.1-Pig1-86A09.5

Sequence:


               
               ATTACATTGAGGAAGCCAATGTAGGCAGGGGTTATATCAAAGAACTTTGCTTCAGCCCTG
ACGGGCGAATGATTTCTTCCCCACACGGCTACGGGATTCGCTTGTTAGGATTTGACAAGC
AGTGCAGTGAACTGATTGACTGTTTGCCCAAAGAAGCCAGTCCCCTGCGGGTGATCCGTT
CTTTGTACTCTCATAATGATGTGGTACTGACGACAAAGTTCTCTCCAACACATTGCCAGA
TCGCCTCCGGGTGCCTTAGTGGACGGGTTTCTCTGTATCAGCCAAAGTTTTAGGCACAAC
TTACATCAACTAAGGAACTTTTCTGGTGTTTGACTTATGTATTACTTCAATTTAGGTGAA
GTATTTTCTTTTTAGAAGATCTTAAAAGTTTTGGTCAAGATCCTGGTTCTTACGGGTCCA
CAAACACACCTGTGACCTGAGTACTTGGTTGTCCAGCATCATGCGGGCATCGCCAAATTA
GACTCGAGGCAGCACCATCTTTTGCAGCATTCCTCTGCTCCTGCTGATCTGTGCCACTGA
ACTCCAGTTCTCCTGGTTATTTTGCATGGTAGCTCTTGTCAATTTTCTTTCAATTCTGTT
TTGTTTTTTGATTTTGGTGTGAATTTTGTGGACATTTGGCAGGAGTTTTGGCTGGATTAG
GAGAAACTCATAACACTAGTATTGAATAAAACCCAGAAGTTTGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTACATTGAGGAAGCCAATGTAGGCAGGGGTTATATCAAAGAACTTTGCTTCAGCCCTG
ACGGGCGAATGATTTCTTCCCCACACGGCTACGGGATTCGCTTGTTAGGATTTGACAAGC
AGTGCAGTGAACTGATTGACTGTTTGCCCAAAGAAGCCAGTCCCCTGCGGGTGATCCGTT
CTTTGTACTCTCATAATGATGTGGTACTGACGACAAAGTTCTCTCCAACACATTGCCAGA
TCGCCTCCGGGTGCCTTAGTGGACGGGTTTCTCTGTATCAGCCAAAGTTTTAGGCACAAC
TTACATCAACTAAGGAACTTTTCTGGTGTTTGACTTATGTATTACTTCAATTTAGGTGAA
GTATTTTCTTTTTAGAAGATCTTAAAAGTTTTGGTCAAGATCCTGGTTCTTACGGGTCCA
CAAACACACCTGTGACCTGAGTACTTGGTTGTCCAGCATCATGCGGGCATCGCCAAATTA
GACTCGAGGCAGCACCATCTTTTGCAGCATTCCTCTGCTCCTGCTGATCTGTGCCACTGA
ACTCCAGTTCTCCTGGTTATTTTGCATGGTAGCTCTTGTCAATTTTCTTTCAATTCTGTT
TTGTTTTTTGATTTTGGTGTGAATTTTGTGGACATTTGGCAGGAGTTTTGGCTGGATTAG
GAGAAACTCATAACACTAGTATTGAATAAAACCCAGAAGTTTGAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26345358|dbj|BAC36330.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26345358|dbj|BAC36330.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               40-159, - strand, RNAz p=0.935527
               

               
               319-433, - strand, RNAz p=0.628702
               

               
               474-590, - strand, RNAz p=0.724384

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.935527
               

               
               319-433, - strand, RNAz p=0.628702
               

               
               474-590, - strand, RNAz p=0.724384

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-704, gnl|bosTau2|chr8 (29048817-29049496)
               

               
               1-704, gnl|Hg17|chr9 (37851213-37851956)
               

               
               1-704, gnl|Mm7|chr4 (45387799-45388517)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-704, gnl|bosTau2|chr8 (29048817-29049496)
               

               
               1-704, gnl|Hg17|chr9 (37851213-37851956)
               

               
               1-704, gnl|Mm7|chr4 (45387799-45388517)

	40-159, - strand, RNAz p=0.935527
	319-433, - strand, RNAz p=0.628702
	474-590, - strand, RNAz p=0.724384

	1-704, gnl\|bosTau2\|chr8 (29048817-29049496)
	1-704, gnl\|Hg17\|chr9 (37851213-37851956)
	1-704, gnl\|Mm7\|chr4 (45387799-45388517)