Non-Coding RNA Search

Ss1.1-Pig1-86F22.5

Sequence:


               
               ATGACTATTCTGCACGGGGGCTTCTTGCTGGCCGAGCAGCTCTTCCACCCCAAAGCTCTG
GCAGAACTGACCAAGTCTGACTGGGAGCACGTCGGGCGGCCCATCGTGGAGGCTCTGAGG
GAGATCTCCGCGGCCACGGCGCACTCCCAGCCCCTCGCCTGGAAAGAAGAAGGCCCTGAT
CATCATCTGGGCCAAGGTTCTTCAGCCCTACCCCGCCACCCCTTCCGACACCGAAGCTCG
GTGGCAGGAGGACGTGTTCTTCTCCGTAGGCAACATGATCCCCGCCATCAATCACACGGT
CCTTTTCGAGCTGCTCAAGTCCCTGGAAGCGTCCGGGCTCTTTATCCAGCTCCTGCTGGC
CCTGCCCACCGCCGTCTGCCGCGCCGAACTGGAGCGCTTTTTGGAGCACATGGCTGTCGA
CACGTCTTCAAAGGACGTGGCCTTTTTCCTCGACGTCTGGTGGGAAATGATGAAGCACAA
GGACGATCAGCAGGACCCCCTGCTCTCCCAGTTCCGGACAATGGCCCATAAGTACCTGTC
CTCTTCGGATGAGTTCTCCCACCCTCCCAAGAGGTTTAAGTCGGACCCGGACGTGTGTCC
TACCATGCCCCTGCTGGCCATGCTGCTCGCCGGGCTGAAGCAAATCCGAAGTCGGATCCT
GTGTCCCGGGATGAAGTGCTGCACGCTGGCCAACCTGGCCGACATGCTGAGCGTGTTCGC
GCTGGCGGAGGACGACCCCCAGGAAGTGTCGGCGACCGTGTATCTGGACAAACTGGCCAC
GGTGATCTCCGTGTGGAACTCGGACGCCCGGAACCCGTATCACCAGCAGGCGCTGGCGGA
GAAGGTCAAGGAGGCCGAGCGGGACATCAGCCTCACCTCGCTGGCCAGGCTGCCCAGCGA
GACGACGTTCGTGGGCTTCGAGTTCCTGCGCGGCCTGCTGCGGGACTGGGGGGAGGAGCT
GCAGGCCATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGACTATTCTGCACGGGGGCTTCTTGCTGGCCGAGCAGCTCTTCCACCCCAAAGCTCTG
GCAGAACTGACCAAGTCTGACTGGGAGCACGTCGGGCGGCCCATCGTGGAGGCTCTGAGG
GAGATCTCCGCGGCCACGGCGCACTCCCAGCCCCTCGCCTGGAAAGAAGAAGGCCCTGAT
CATCATCTGGGCCAAGGTTCTTCAGCCCTACCCCGCCACCCCTTCCGACACCGAAGCTCG
GTGGCAGGAGGACGTGTTCTTCTCCGTAGGCAACATGATCCCCGCCATCAATCACACGGT
CCTTTTCGAGCTGCTCAAGTCCCTGGAAGCGTCCGGGCTCTTTATCCAGCTCCTGCTGGC
CCTGCCCACCGCCGTCTGCCGCGCCGAACTGGAGCGCTTTTTGGAGCACATGGCTGTCGA
CACGTCTTCAAAGGACGTGGCCTTTTTCCTCGACGTCTGGTGGGAAATGATGAAGCACAA
GGACGATCAGCAGGACCCCCTGCTCTCCCAGTTCCGGACAATGGCCCATAAGTACCTGTC
CTCTTCGGATGAGTTCTCCCACCCTCCCAAGAGGTTTAAGTCGGACCCGGACGTGTGTCC
TACCATGCCCCTGCTGGCCATGCTGCTCGCCGGGCTGAAGCAAATCCGAAGTCGGATCCT
GTGTCCCGGGATGAAGTGCTGCACGCTGGCCAACCTGGCCGACATGCTGAGCGTGTTCGC
GCTGGCGGAGGACGACCCCCAGGAAGTGTCGGCGACCGTGTATCTGGACAAACTGGCCAC
GGTGATCTCCGTGTGGAACTCGGACGCCCGGAACCCGTATCACCAGCAGGCGCTGGCGGA
GAAGGTCAAGGAGGCCGAGCGGGACATCAGCCTCACCTCGCTGGCCAGGCTGCCCAGCGA
GACGACGTTCGTGGGCTTCGAGTTCCTGCGCGGCCTGCTGCGGGACTGGGGGGAGGAGCT
GCAGGCCATGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55644745|ref|XP_511245.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55644745|ref|XP_511245.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-199, - strand, RNAz p=0.65563

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.65563

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-972, gnl|bosTau2|chr19 (16547923-16548893)
               

               
               1-972, gnl|Hg17|chr17 (597999-597029)
               

               
               1-972, gnl|Mm7|chr11 (76295474-76294504)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-972, gnl|bosTau2|chr19 (16547923-16548893)
               

               
               1-972, gnl|Hg17|chr17 (597999-597029)
               

               
               1-972, gnl|Mm7|chr11 (76295474-76294504)

	1-972, gnl\|bosTau2\|chr19 (16547923-16548893)
	1-972, gnl\|Hg17\|chr17 (597999-597029)
	1-972, gnl\|Mm7\|chr11 (76295474-76294504)