Ss1.1-Pig1-86J06.5
|
GGACCATCCCAGCAAGCGGGCGAGCCAGGCAGGCCGGCTGGGCCTGGGGCTCCTGCAGAG
GCACTTGCTCTGAGTGGAGGCGCTCACTCTGCCCAGTGCAATAGAGTTTCACATATTTTT
CAACTGGGAGAGAGAAGCTGTTTTTTTTCCTTCCTGCAGAGCAAGCTTGATCCCCAGGAA
GGAAAAAAAACAGCTTCACTCTGCCCAGTGCAATAGAGTTTCACATATTTTTCAACTGGG
AGAGAGAAGCTGTTTTTTTCCTTCCTGCAGAGCAAGCTTGATCCCCAGCCAACCATAGAT
CAGTTATCCTATGACAATATTAGGCATCAGGCTCTCTTGGATTAAGATCAAAGTGTCCTT
ATCACTTTGATTCCTACTTTTGTTTTTAACCAACCTACACTTTCAATGGCCGAGGGAAAA
CAGGGGACACTACTACGGGGCACAGGGCCTGGGAGGCTGCTGGTCCCCACTGGGTCGAAG
ACAAGTCCAGCCACCGTGTGGAGCCAGAAGTGACTGGAGCAGCGGTGCAGGGACGGGGTG |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGACCATCCCAGCAAGCGGGCGAGCCAGGCAGGCCGGCTGGGCCTGGGGCTCCTGCAGAG
GCACTTGCTCTGAGTGGAGGCGCTCACTCTGCCCAGTGCAATAGAGTTTCACATATTTTT
CAACTGGGAGAGAGAAGCTGTTTTTTTTCCTTCCTGCAGAGCAAGCTTGATCCCCAGGAA
GGAAAAAAAACAGCTTCACTCTGCCCAGTGCAATAGAGTTTCACATATTTTTCAACTGGG
AGAGAGAAGCTGTTTTTTTCCTTCCTGCAGAGCAAGCTTGATCCCCAGCCAACCATAGAT
CAGTTATCCTATGACAATATTAGGCATCAGGCTCTCTTGGATTAAGATCAAAGTGTCCTT
ATCACTTTGATTCCTACTTTTGTTTTTAACCAACCTACACTTTCAATGGCCGAGGGAAAA
CAGGGGACACTACTACGGGGCACAGGGCCTGGGAGGCTGCTGGTCCCCACTGGGTCGAAG
ACAAGTCCAGCCACCGTGTGGAGCCAGAAGTGACTGGAGCAGCGGTGCAGGGACGGGGTG |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
68-171, + strand, RNAmicro p=0.998588 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
68-171, + strand, RNAmicro p=0.998588 |
|
274-387, UI-E-DX0-agr-d-14-0-UI.r1 UI-E-DX0 Homo sapiens cDNA clone
(gb|BM710612.1|), blast E-value=3.00018e-42, identity=94.74% |
|
274-387, AGENCOURT_6699427 NIH_MGC_72 Homo sapiens cDNA clone IMAGE
(gb|BM904980.1|), blast E-value=3.00018e-42, identity=94.74% |
|
274-385, AGENCOURT_14276136 NIH_MGC_180 Homo sapiens cDNA clone
(gb|CD358798.1|), blast E-value=4.00001e-41, identity=94.64% |
|
274-387, 1272122 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN527285.1|),
blast E-value=2e-37, identity=92.98% |
|
274-387, HESC4_124_H04.g1_A037 NIH_MGC_262 Homo sapiens cDNA clone
(gb|DR761142.1|), blast E-value=3.00018e-42, identity=94.74% |
|
274-387, LB0168.CR_C07 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT817721.1|),
blast E-value=2e-37, identity=92.98% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
274-387, UI-E-DX0-agr-d-14-0-UI.r1 UI-E-DX0 Homo sapiens cDNA clone
(gb|BM710612.1|), blast E-value=3.00018e-42, identity=94.74% |
|
274-387, AGENCOURT_6699427 NIH_MGC_72 Homo sapiens cDNA clone IMAGE
(gb|BM904980.1|), blast E-value=3.00018e-42, identity=94.74% |
|
274-385, AGENCOURT_14276136 NIH_MGC_180 Homo sapiens cDNA clone
(gb|CD358798.1|), blast E-value=4.00001e-41, identity=94.64% |
|
274-387, 1272122 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN527285.1|),
blast E-value=2e-37, identity=92.98% |
|
274-387, HESC4_124_H04.g1_A037 NIH_MGC_262 Homo sapiens cDNA clone
(gb|DR761142.1|), blast E-value=3.00018e-42, identity=94.74% |
|
274-387, LB0168.CR_C07 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT817721.1|),
blast E-value=2e-37, identity=92.98% |
|
41-177, gnl|bosTau2|chr11 (56063640-56063776) |
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41-177, gnl|canFam2|chr17 (21230977-21231122) |
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41-177, gnl|dasNov1|scaffold_40895 (6518-6383) |
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41-177, gnl|echTel1|scaffold_267232 (3127-3232) |
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41-177, gnl|galGal2|chr3 (102175349-102175499) |
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41-177, gnl|hg17|chr2 (23841362-23841486) |
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41-177, gnl|Hg17|chr2 (23841422-23841532) |
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41-177, gnl|loxAfr1|scaffold_5370 (54871-54999) |
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41-177, gnl|mm7|chr12 (5022262-5022124) |
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41-177, gnl|Mm7|chr12 (5022212-5022076) |
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41-177, gnl|panTro1|chr12 (24726041-24726165) |
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41-177, gnl|rheMac2|chr13 (23616640-23616781) |
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41-177, gnl|rn3|chr6 (28394248-28394109) |
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41-177, gnl|xenTro1|scaffold_226 (803371-803240) |
| |
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196-522, gnl|bosTau2|chr11 (56063684-56064013) |
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196-522, gnl|Hg17|chr2 (23841441-23841769) |
|
196-522, gnl|Mm7|chr12 (5022164-5021797) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
41-177, gnl|bosTau2|chr11 (56063640-56063776) |
|
41-177, gnl|canFam2|chr17 (21230977-21231122) |
|
41-177, gnl|dasNov1|scaffold_40895 (6518-6383) |
|
41-177, gnl|echTel1|scaffold_267232 (3127-3232) |
|
41-177, gnl|galGal2|chr3 (102175349-102175499) |
|
41-177, gnl|hg17|chr2 (23841362-23841486) |
|
41-177, gnl|Hg17|chr2 (23841422-23841532) |
|
41-177, gnl|loxAfr1|scaffold_5370 (54871-54999) |
|
41-177, gnl|mm7|chr12 (5022262-5022124) |
|
41-177, gnl|Mm7|chr12 (5022212-5022076) |
|
41-177, gnl|panTro1|chr12 (24726041-24726165) |
|
41-177, gnl|rheMac2|chr13 (23616640-23616781) |
|
41-177, gnl|rn3|chr6 (28394248-28394109) |
|
41-177, gnl|xenTro1|scaffold_226 (803371-803240) |
| |
|
196-522, gnl|bosTau2|chr11 (56063684-56064013) |
|
196-522, gnl|Hg17|chr2 (23841441-23841769) |
|
196-522, gnl|Mm7|chr12 (5022164-5021797) |
