Non-Coding RNA Search

Ss1.1-Pig1-87M15.5

Sequence:


               
               CTCTCAGTGCCTTGCACCAGCAGACAGTGGAGTCCCTGCCTAACCTGCAGGAGGTGGGTC
TCCATGGCAACCCCATCCGCTGTGACTGCGTCATCCGCTGGGCCAATGCCACGGGCACCC
GCGTCCGCTTCATCGAGCCTCAGTCCACGCTGTGCGCCGAACCGCCAGACCTCCAGCGCC
GCCCAGTGCGGGAGGTGCCCTTCCGGGAGATGACGGACCACTGCCTGCCCCTCATCTCCC
CCCGCAGCTTCCCCTCCAGCCTCCAGGTGGCCAGTGGAGAGAGCCTGGTGCTGCACTGCC
GGGCGCTGGCTGAACCGGAACCTGAGATCTACTGGGTCACTCCAGCAGGGGTTCGACTGA
CGGCTGCCCGGGCAGGCAGGAAGTACCGGGTGTACCCCGAGGGGACCCTGGAGCTTCGGA
GGGTGACAGTGGAAGAGGCAGGGCTGTACACTTGTGTGGCCCAGAACCTGGTAGGGGCTG
ACACTAAGACGGTTAGTGTGGTTGTTGGCCGGGCTCCCCTGCAGCTGGGCAGAGACAAGG
GATGGGGGCTGGAGCTCCGGGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCAGTGCCTTGCACCAGCAGACAGTGGAGTCCCTGCCTAACCTGCAGGAGGTGGGTC
TCCATGGCAACCCCATCCGCTGTGACTGCGTCATCCGCTGGGCCAATGCCACGGGCACCC
GCGTCCGCTTCATCGAGCCTCAGTCCACGCTGTGCGCCGAACCGCCAGACCTCCAGCGCC
GCCCAGTGCGGGAGGTGCCCTTCCGGGAGATGACGGACCACTGCCTGCCCCTCATCTCCC
CCCGCAGCTTCCCCTCCAGCCTCCAGGTGGCCAGTGGAGAGAGCCTGGTGCTGCACTGCC
GGGCGCTGGCTGAACCGGAACCTGAGATCTACTGGGTCACTCCAGCAGGGGTTCGACTGA
CGGCTGCCCGGGCAGGCAGGAAGTACCGGGTGTACCCCGAGGGGACCCTGGAGCTTCGGA
GGGTGACAGTGGAAGAGGCAGGGCTGTACACTTGTGTGGCCCAGAACCTGGTAGGGGCTG
ACACTAAGACGGTTAGTGTGGTTGTTGGCCGGGCTCCCCTGCAGCTGGGCAGAGACAAGG
GATGGGGGCTGGAGCTCCGGGTGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               138-283, - strand, RNAz p=0.968804
               

               
               160-279, - strand, RNAz p=0.728908

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               138-283, - strand, RNAz p=0.968804
               

               
               160-279, - strand, RNAz p=0.728908

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-463, gnl|bosTau2|chr16 (1800840-1801302)
               

               
               1-463, gnl|canFam2|chr38 (4165144-4165808)
               

               
               1-463, gnl|danRer3|chr11 (21300339-21301012)
               

               
               1-463, gnl|dasNov1|scaffold_28054 (5135-5799)
               

               
               1-463, gnl|echTel1|scaffold_167861 (9170-9834)
               

               
               1-463, gnl|fr1|chrUn (146419682-146419022)
               

               
               1-463, gnl|galGal2|chr26 (447499-448163)
               

               
               1-463, gnl|hg17|chr1 (201319255-201319919)
               

               
               1-463, gnl|Hg17|chr1 (201319741-201319279)
               

               
               1-463, gnl|loxAfr1|scaffold_51204 (10925-10261)
               

               
               1-463, gnl|mm7|chr1 (132839643-132838979)
               

               
               1-463, gnl|Mm7|chr1 (132839155-132839706)
               

               
               1-463, gnl|monDom2|scaffold_13 (5908304-5908968)
               

               
               1-463, gnl|oryCun1|scaffold_195216 (4754-4091)
               

               
               1-463, gnl|panTro1|chr1 (184263150-184263814)
               

               
               1-463, gnl|rheMac2|chr1 (165805808-165805144)
               

               
               1-463, gnl|rn3|chr13 (45851089-45850425)
               

               
               1-463, gnl|tetNig1|chr11 (6841887-6841222)
               

               
               1-463, gnl|xenTro1|scaffold_173 (1646016-1645349)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-463, gnl|bosTau2|chr16 (1800840-1801302)
               

               
               1-463, gnl|canFam2|chr38 (4165144-4165808)
               

               
               1-463, gnl|danRer3|chr11 (21300339-21301012)
               

               
               1-463, gnl|dasNov1|scaffold_28054 (5135-5799)
               

               
               1-463, gnl|echTel1|scaffold_167861 (9170-9834)
               

               
               1-463, gnl|fr1|chrUn (146419682-146419022)
               

               
               1-463, gnl|galGal2|chr26 (447499-448163)
               

               
               1-463, gnl|hg17|chr1 (201319255-201319919)
               

               
               1-463, gnl|Hg17|chr1 (201319741-201319279)
               

               
               1-463, gnl|loxAfr1|scaffold_51204 (10925-10261)
               

               
               1-463, gnl|mm7|chr1 (132839643-132838979)
               

               
               1-463, gnl|Mm7|chr1 (132839155-132839706)
               

               
               1-463, gnl|monDom2|scaffold_13 (5908304-5908968)
               

               
               1-463, gnl|oryCun1|scaffold_195216 (4754-4091)
               

               
               1-463, gnl|panTro1|chr1 (184263150-184263814)
               

               
               1-463, gnl|rheMac2|chr1 (165805808-165805144)
               

               
               1-463, gnl|rn3|chr13 (45851089-45850425)
               

               
               1-463, gnl|tetNig1|chr11 (6841887-6841222)
               

               
               1-463, gnl|xenTro1|scaffold_173 (1646016-1645349)

	138-283, - strand, RNAz p=0.968804
	160-279, - strand, RNAz p=0.728908

	1-463, gnl\|bosTau2\|chr16 (1800840-1801302)
	1-463, gnl\|canFam2\|chr38 (4165144-4165808)
	1-463, gnl\|danRer3\|chr11 (21300339-21301012)
	1-463, gnl\|dasNov1\|scaffold_28054 (5135-5799)
	1-463, gnl\|echTel1\|scaffold_167861 (9170-9834)
	1-463, gnl\|fr1\|chrUn (146419682-146419022)
	1-463, gnl\|galGal2\|chr26 (447499-448163)
	1-463, gnl\|hg17\|chr1 (201319255-201319919)
	1-463, gnl\|Hg17\|chr1 (201319741-201319279)
	1-463, gnl\|loxAfr1\|scaffold_51204 (10925-10261)
	1-463, gnl\|mm7\|chr1 (132839643-132838979)
	1-463, gnl\|Mm7\|chr1 (132839155-132839706)
	1-463, gnl\|monDom2\|scaffold_13 (5908304-5908968)
	1-463, gnl\|oryCun1\|scaffold_195216 (4754-4091)
	1-463, gnl\|panTro1\|chr1 (184263150-184263814)
	1-463, gnl\|rheMac2\|chr1 (165805808-165805144)
	1-463, gnl\|rn3\|chr13 (45851089-45850425)
	1-463, gnl\|tetNig1\|chr11 (6841887-6841222)
	1-463, gnl\|xenTro1\|scaffold_173 (1646016-1645349)