Non-Coding RNA Search

Ss1.1-Pig1-88G04.5

Sequence:


               
               GGGCCACACCCAGGGGCCCCTGGACGGGAGCCTGTATGCCAAGGTGAAGAAGAAGGACTC
CCTGAACGGCAGCACCAGCGCCGTCAACGCCACGCGTCCTGTTCTGTCTGCCACCCCCAA
CCACGTGGAGCACACCCTCTCTGTGAGCAGCGACTCCGGCAACTCCACAGCCTCCACCAA
GACCGACAAGACTGATGAGCCTGCCCCTGGCCCCTCCAGTGCCCAGGCTGCCCTGAGTCC
TGAGGAGAAGCGGGAGCTGGACCGCCTGCTCAGCGGCTTCGGCTTGGAGCGAGAAAAGCA
AGGCAGCATGTACCACACGCAGCATCTCCGGTCTCGCCCAGGAGAGGGCCCTGCTGCGCC
CTCCTCTGGCCGCCACATCATCCCGGCCCAGGTTCACGTCAATGGTGGGGCCTTGGCATC
TGAGCGGGAGACGGACATCCTGGATGATGAGCTGCCCAACCAGGATGGGCACAGCGTGGG
CAGCATGGGCACCCTGTCCTCCCTGGATGGGGTCACCAACACCAGTGAGGGGGGCTACCC
GGAGGCCCTGTCCCCTCTGACCAATGGTCTAGACAAGCCCTACTCCGTGGAACCAATGGT
CAATGGTGGAGGCTACCCCTATGAGTCTGCCAGCCGGGTGGTGCCCGCACAGGCTGGCCA
CATGGCCCCCATGCGGCCTTCCTACTCCGCACAGGAGGGTTTAGCAGGCCACCAGCGGGA
GGGGCCCCACCCAGGCTGGTCACAGTCAATGACCACCTCCCACTATGGCCATGACCCCAG
CGGTATGTTCCGCTCTCAGTCCTTTCCGGAAAGCGAGCCCCAGCTGCCCCCAGCTCCAGC
CCGTGGGGGGAGCAGCCGGGAGGCTGTGCAGAGGGGCTTGAATTGCTGGCAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCCTCGCCCACCTCCTCGCCAGCAGGAAAGAGCCCA
CTTGGAGAGTCTCGGGCTCAGCAGGCCCAGCCCCCAGCCACTGGCAGAGCCCCCCATGCC
AGGCCTCCCTGAGTTCCCGCGGGCGGCCTCACAGCAGGAGATCGAGCAGTCCATCGAAAC
CCTCAACATGCTGATGCTAGATCTGGAGCCAGCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCACACCCAGGGGCCCCTGGACGGGAGCCTGTATGCCAAGGTGAAGAAGAAGGACTC
CCTGAACGGCAGCACCAGCGCCGTCAACGCCACGCGTCCTGTTCTGTCTGCCACCCCCAA
CCACGTGGAGCACACCCTCTCTGTGAGCAGCGACTCCGGCAACTCCACAGCCTCCACCAA
GACCGACAAGACTGATGAGCCTGCCCCTGGCCCCTCCAGTGCCCAGGCTGCCCTGAGTCC
TGAGGAGAAGCGGGAGCTGGACCGCCTGCTCAGCGGCTTCGGCTTGGAGCGAGAAAAGCA
AGGCAGCATGTACCACACGCAGCATCTCCGGTCTCGCCCAGGAGAGGGCCCTGCTGCGCC
CTCCTCTGGCCGCCACATCATCCCGGCCCAGGTTCACGTCAATGGTGGGGCCTTGGCATC
TGAGCGGGAGACGGACATCCTGGATGATGAGCTGCCCAACCAGGATGGGCACAGCGTGGG
CAGCATGGGCACCCTGTCCTCCCTGGATGGGGTCACCAACACCAGTGAGGGGGGCTACCC
GGAGGCCCTGTCCCCTCTGACCAATGGTCTAGACAAGCCCTACTCCGTGGAACCAATGGT
CAATGGTGGAGGCTACCCCTATGAGTCTGCCAGCCGGGTGGTGCCCGCACAGGCTGGCCA
CATGGCCCCCATGCGGCCTTCCTACTCCGCACAGGAGGGTTTAGCAGGCCACCAGCGGGA
GGGGCCCCACCCAGGCTGGTCACAGTCAATGACCACCTCCCACTATGGCCATGACCCCAG
CGGTATGTTCCGCTCTCAGTCCTTTCCGGAAAGCGAGCCCCAGCTGCCCCCAGCTCCAGC
CCGTGGGGGGAGCAGCCGGGAGGCTGTGCAGAGGGGCTTGAATTGCTGGCAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCCTCGCCCACCTCCTCGCCAGCAGGAAAGAGCCCA
CTTGGAGAGTCTCGGGCTCAGCAGGCCCAGCCCCCAGCCACTGGCAGAGCCCCCCATGCC
AGGCCTCCCTGAGTTCCCGCGGGCGGCCTCACAGCAGGAGATCGAGCAGTCCATCGAAAC
CCTCAACATGCTGATGCTAGATCTGGAGCCAGCGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55615966|ref|XP_516081.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55615966|ref|XP_516081.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               401-840, - strand, RNAz p=0.984611

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               401-840, - strand, RNAz p=0.984611

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1113, gnl|bosTau2|chr2 (63399385-63398273)
               

               
               1-1113, gnl|Hg17|chr2 (218539309-218538206)
               

               
               1-1113, gnl|Mm7|chr1 (74196193-74195105)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1113, gnl|bosTau2|chr2 (63399385-63398273)
               

               
               1-1113, gnl|Hg17|chr2 (218539309-218538206)
               

               
               1-1113, gnl|Mm7|chr1 (74196193-74195105)

	1-1113, gnl\|bosTau2\|chr2 (63399385-63398273)
	1-1113, gnl\|Hg17\|chr2 (218539309-218538206)
	1-1113, gnl\|Mm7\|chr1 (74196193-74195105)