Non-Coding RNA Search

Ss1.1-Pig1-89C09.5

Sequence:


               
               TTTCTCTCAGACCTGGACCATCTTCATCTTCCTCCCCATTATAATTTGAACATTTCACAA
ATTTCATCACCTAGAAATTCTTTCCTAATTAAGTGGGACAGATTGAGGTGACATTCCCTT
CCCCTCTCCCCCTCAGAGTGCTCCCTTCAATTATCTGCCTTGATGTCTGATACAGATTAG
CACAGGCCTTCAAGTCCAGGAACTGAGAGATTGGGCCAGGCTGAAAAGAAACCCGACTGT
GGGCAAAGGACAAATTTCAATAAAAATTGAAAATACAATCCACAGTACTAGTACTGTACA
TCTTCAGGCTCCTGATGGCACATGGCCATGAGGTGTATCATCACTTTAATGCTGGTAAGT
GTGAGCAAGGCTGACGGAACATTTTCTGAACTGGAAAGCTTCAGGGTGCTAGAAGTTTTT
TTTCTTTAACATATCTAAAATGCTGTCCCAGTTCTTACCCTAGGAAACTAACCTTTCGAA
AATCAAGATGAGATGAATTAACTTAGATTTTTTTAAAAAGCTTAACCTGAAGATCCCCAT
CCCCACCCCAACTCCATTACATTGGTGCTGGAAAGAATGAAGCTTCTTCCGTAACTTCTT
TTTCCTAGAGAAACCTCTGTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTCTCAGACCTGGACCATCTTCATCTTCCTCCCCATTATAATTTGAACATTTCACAA
ATTTCATCACCTAGAAATTCTTTCCTAATTAAGTGGGACAGATTGAGGTGACATTCCCTT
CCCCTCTCCCCCTCAGAGTGCTCCCTTCAATTATCTGCCTTGATGTCTGATACAGATTAG
CACAGGCCTTCAAGTCCAGGAACTGAGAGATTGGGCCAGGCTGAAAAGAAACCCGACTGT
GGGCAAAGGACAAATTTCAATAAAAATTGAAAATACAATCCACAGTACTAGTACTGTACA
TCTTCAGGCTCCTGATGGCACATGGCCATGAGGTGTATCATCACTTTAATGCTGGTAAGT
GTGAGCAAGGCTGACGGAACATTTTCTGAACTGGAAAGCTTCAGGGTGCTAGAAGTTTTT
TTTCTTTAACATATCTAAAATGCTGTCCCAGTTCTTACCCTAGGAAACTAACCTTTCGAA
AATCAAGATGAGATGAATTAACTTAGATTTTTTTAAAAAGCTTAACCTGAAGATCCCCAT
CCCCACCCCAACTCCATTACATTGGTGCTGGAAAGAATGAAGCTTCTTCCGTAACTTCTT
TTTCCTAGAGAAACCTCTGTAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               168-477, + strand, RNAz p=0.981692

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-477, + strand, RNAz p=0.981692

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               403-517, - strand, RNAmicro p=0.983205

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               403-517, - strand, RNAmicro p=0.983205

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr1 (41163306-41162661)
               

               
               1-624, gnl|Hg17|chr3 (120637643-120637007)
               

               
               1-624, gnl|Mm7|chr16 (38297970-38298614)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr1 (41163306-41162661)
               

               
               1-624, gnl|Hg17|chr3 (120637643-120637007)
               

               
               1-624, gnl|Mm7|chr16 (38297970-38298614)

	1-624, gnl\|bosTau2\|chr1 (41163306-41162661)
	1-624, gnl\|Hg17\|chr3 (120637643-120637007)
	1-624, gnl\|Mm7\|chr16 (38297970-38298614)