Non-Coding RNA Search

Ss1.1-Pig1-89E07.5

Sequence:


               
               TAAGGTCCCTGCCAAAGACTACTTTGTGGCCACCACTATTGTGGTGGTCTTCTTCACAGT
CATTGTGCAGGGCCTGACCATCAAGCCACTGGTCAAGTGGCTAAAGGTGAAGAGGAGTGA
GCATCATAAACCTACCCTGAATCAGGAGCTGCATGAGCACACTTTTGACCACATTCTGGC
TGCAGTGGAGGACGTTGTGGGGCACCATGGCTATCACTACTGGAGGGACAGGTGGGAGCA
GTTTGACAAGAAGTACCTGAGTCAGCTGTTGATGCGGCGGTCAGCCTACCGCATCCGGGA
CCAGATCTGGGATGTGTATTACAGACTCAACATCCGGGATGCCATCAGCTTCGTGGACCA
GGGAGGTCACGTCTTGTCCTCTACTGGGCTCACTCTGCCCTCAATGCCCAGCCGCAATTC
TGTGGCCGAGACTTCTGTCACCAACCTACTGAGGGAAAGTGGCAGTGGAGCATGTCTGGA
TCTGCAGGTGATTGACACAGTGCGCAGCGGCCGGGACCGTGAGGATGCTGTGATGCACCA
CCTGCTCTGTGGAGGCCTCTACAAACCACGCCGCAGGGTGAGAGCAGGCAGGGCGTGAGA
GTTCTGAGGGGGAGCATTGTCTGGGGAGGCCATGAATGAAGGTTCCAGAGGCAGCTGGCA
CCAGCCTGTGGAGAGTTATCGATGCCCAGCTGAAGAGTGTGGGCTTCATCTCGTGGGTTA
TAGCTTTTAGTTTTTTTTTTTTTTTTGAGAAAGGTTGGCCTGTTATAAGAACTGTTTAAG
AATGTCTTCTCTGGTAGTAGAGGGCAGATCAAATTGAGAGGCTGGAAGAGCCAGTTGGGA
AGCTGGAGTGAAACGTANACAGATTAAAGCTGGGTGACTGGAAGGGAGAGGGGCACACAG
GACTGCATGATCAACCAGGAAGGGGACAGCAGGAGTTAGAGGACAGGGCTTGATGGGGTC
------------GAGTGCTGAGGAAGCCTGTGGGACCAGCTTAACCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGGTCCCTGCCAAAGACTACTTTGTGGCCACCACTATTGTGGTGGTCTTCTTCACAGT
CATTGTGCAGGGCCTGACCATCAAGCCACTGGTCAAGTGGCTAAAGGTGAAGAGGAGTGA
GCATCATAAACCTACCCTGAATCAGGAGCTGCATGAGCACACTTTTGACCACATTCTGGC
TGCAGTGGAGGACGTTGTGGGGCACCATGGCTATCACTACTGGAGGGACAGGTGGGAGCA
GTTTGACAAGAAGTACCTGAGTCAGCTGTTGATGCGGCGGTCAGCCTACCGCATCCGGGA
CCAGATCTGGGATGTGTATTACAGACTCAACATCCGGGATGCCATCAGCTTCGTGGACCA
GGGAGGTCACGTCTTGTCCTCTACTGGGCTCACTCTGCCCTCAATGCCCAGCCGCAATTC
TGTGGCCGAGACTTCTGTCACCAACCTACTGAGGGAAAGTGGCAGTGGAGCATGTCTGGA
TCTGCAGGTGATTGACACAGTGCGCAGCGGCCGGGACCGTGAGGATGCTGTGATGCACCA
CCTGCTCTGTGGAGGCCTCTACAAACCACGCCGCAGGGTGAGAGCAGGCAGGGCGTGAGA
GTTCTGAGGGGGAGCATTGTCTGGGGAGGCCATGAATGAAGGTTCCAGAGGCAGCTGGCA
CCAGCCTGTGGAGAGTTATCGATGCCCAGCTGAAGAGTGTGGGCTTCATCTCGTGGGTTA
TAGCTTTTAGTTTTTTTTTTTTTTTTGAGAAAGGTTGGCCTGTTATAAGAACTGTTTAAG
AATGTCTTCTCTGGTAGTAGAGGGCAGATCAAATTGAGAGGCTGGAAGAGCCAGTTGGGA
AGCTGGAGTGAAACGTANACAGATTAAAGCTGGGTGACTGGAAGGGAGAGGGGCACACAG
GACTGCATGATCAACCAGGAAGGGGACAGCAGGAGTTAGAGGACAGGGCTTGATGGGGTC
------------GAGTGCTGAGGAAGCCTGTGGGACCAGCTTAACCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               O00617_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               O00617_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               650-758, + strand, RNAz p=0.879913

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               650-758, + strand, RNAz p=0.879913

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               230-369, gnl|bosTau2|chr18 (28724598-28724459)
               

               
               230-369, gnl|Hg17|chr16 (65849720-65849859)
               

               
               230-369, gnl|Mm7|chr8 (103957011-103957151)
               


               
               451-958, gnl|bosTau2|chr18 (28723740-28723221)
               

               
               451-958, gnl|Hg17|chr16 (65851224-65852086)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               230-369, gnl|bosTau2|chr18 (28724598-28724459)
               

               
               230-369, gnl|Hg17|chr16 (65849720-65849859)
               

               
               230-369, gnl|Mm7|chr8 (103957011-103957151)
               


               
               451-958, gnl|bosTau2|chr18 (28723740-28723221)
               

               
               451-958, gnl|Hg17|chr16 (65851224-65852086)

	230-369, gnl\|bosTau2\|chr18 (28724598-28724459)
	230-369, gnl\|Hg17\|chr16 (65849720-65849859)
	230-369, gnl\|Mm7\|chr8 (103957011-103957151)

	451-958, gnl\|bosTau2\|chr18 (28723740-28723221)
	451-958, gnl\|Hg17\|chr16 (65851224-65852086)