Non-Coding RNA Search

Ss1.1-Pig1-8O19.5

Sequence:


               
               TTTTTTGTCATCTAGTGCTGAGTGATGGTGGTTTTCATGTTTTGTCTGTTGACTACAGNA
GTACGTGTTAAGAGTACAAAGATTTTCAGTAAGTAGGAGGCTTCTGATGTTCCTCATTTT
GGAGGCAGTGATACTGTGTTTGCCTTTCCTTGCTGCTAGGATTCGGGGACTCAACGGGTA
AGCCCACAGAGGAGGGACTGACTGCAGATGCTATTTGTGTCTATGAGTGGACCAAGGCAA
GAAGTGGTACCACCCCTGTGTGTCTCTGGGGCCACTCTCTGGGTACAGGAGTTGCAACAA
ATGCTGCAAAAGTTCTAGAAGAGAAAGGATTCCCAGTTGATGCTATTATCCTGGAAGCTC
CATTTACCAACGTGTGGGTTGCAACTATCAATTATCCCTTGTTAAAGATTTACCGGAAAC
TTCCAGGATTTTTACATGAGGTTATGGATGCCCTGAGGAGAGACAAAATAGTCTTCCCTA
ATGATGAAAATGTTAAATTCCTGTCTTCACCCCTTCTCATCATACATGGAGAGAATGACA
AAACAGTGCCTTTGGAATGTGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTGTCATCTAGTGCTGAGTGATGGTGGTTTTCATGTTTTGTCTGTTGACTACAGNA
GTACGTGTTAAGAGTACAAAGATTTTCAGTAAGTAGGAGGCTTCTGATGTTCCTCATTTT
GGAGGCAGTGATACTGTGTTTGCCTTTCCTTGCTGCTAGGATTCGGGGACTCAACGGGTA
AGCCCACAGAGGAGGGACTGACTGCAGATGCTATTTGTGTCTATGAGTGGACCAAGGCAA
GAAGTGGTACCACCCCTGTGTGTCTCTGGGGCCACTCTCTGGGTACAGGAGTTGCAACAA
ATGCTGCAAAAGTTCTAGAAGAGAAAGGATTCCCAGTTGATGCTATTATCCTGGAAGCTC
CATTTACCAACGTGTGGGTTGCAACTATCAATTATCCCTTGTTAAAGATTTACCGGAAAC
TTCCAGGATTTTTACATGAGGTTATGGATGCCCTGAGGAGAGACAAAATAGTCTTCCCTA
ATGATGAAAATGTTAAATTCCTGTCTTCACCCCTTCTCATCATACATGGAGAGAATGACA
AAACAGTGCCTTTGGAATGTGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32263443|gb|AAP78477.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32263443|gb|AAP78477.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               170-289, + strand, RNAz p=0.518824

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               170-289, + strand, RNAz p=0.518824

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AY311396, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AY311396, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               74-289, gnl|bosTau2|chr10 (29308274-29308490)
               

               
               74-289, gnl|Hg17|chr14 (50422151-50422363)
               

               
               74-289, gnl|Mm7|chr12 (68110107-68110315)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-289, gnl|bosTau2|chr10 (29308274-29308490)
               

               
               74-289, gnl|Hg17|chr14 (50422151-50422363)
               

               
               74-289, gnl|Mm7|chr12 (68110107-68110315)

	74-289, gnl\|bosTau2\|chr10 (29308274-29308490)
	74-289, gnl\|Hg17\|chr14 (50422151-50422363)
	74-289, gnl\|Mm7\|chr12 (68110107-68110315)