Non-Coding RNA Search

Ss1.1-Pig1-90F24.5

Sequence:


               
               ATTCCTGGAGTCTTTTAGAAAAAACTGCGTGGCACACTCTGGTCCTCCCCTCCCCTTGGC
GGTGGCCTCGTCCCACAGTGTGGGCCCCAACTGTGTGGCCAGCAGGGCAAACTTGGTGGG
TGCCCGGCATGAGCAGTCGGGGAGGGGTGCCCCGGGTGGCAGCCCCGCCGAGCCCATCAA
GAGGATGAGCGTGATGGTGAACAGCAGTGACTCCACGCTCTCCCTCGGCCCCTTCGTGCA
CCAGGCCGGCGAGCTGCCCGTCAACTCTCATGGCGGCTACTCACACCCACACACTCCCCT
GGACAGACTCATAGGAAAGAAAAGAAAGTGCTCGCCTGGCTCGGGTAGCATCAGCAATAG
CAGTGGCAAACCCAGCAAGGTCGCCAGGTTGCCAGCCGTGAACAACGTGCACGTGAAGCA
CTCGGGCCCCAGCCCGGGGCCACCGGGGCTGATGAACAGTTCCCTCCTCCATCAGCCAAA
GGCACGTCCCTGACAGCTGAAAATAGCACGGGGAGGAATAATCTGGACACTTTTGATGAC
AAGTTACACCTCCACTCTGCACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCCTGGAGTCTTTTAGAAAAAACTGCGTGGCACACTCTGGTCCTCCCCTCCCCTTGGC
GGTGGCCTCGTCCCACAGTGTGGGCCCCAACTGTGTGGCCAGCAGGGCAAACTTGGTGGG
TGCCCGGCATGAGCAGTCGGGGAGGGGTGCCCCGGGTGGCAGCCCCGCCGAGCCCATCAA
GAGGATGAGCGTGATGGTGAACAGCAGTGACTCCACGCTCTCCCTCGGCCCCTTCGTGCA
CCAGGCCGGCGAGCTGCCCGTCAACTCTCATGGCGGCTACTCACACCCACACACTCCCCT
GGACAGACTCATAGGAAAGAAAAGAAAGTGCTCGCCTGGCTCGGGTAGCATCAGCAATAG
CAGTGGCAAACCCAGCAAGGTCGCCAGGTTGCCAGCCGTGAACAACGTGCACGTGAAGCA
CTCGGGCCCCAGCCCGGGGCCACCGGGGCTGATGAACAGTTCCCTCCTCCATCAGCCAAA
GGCACGTCCCTGACAGCTGAAAATAGCACGGGGAGGAATAATCTGGACACTTTTGATGAC
AAGTTACACCTCCACTCTGCACTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               313-426, - strand, RNAz p=0.888464

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-426, - strand, RNAz p=0.888464

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               1-475, gnl|bosTau2|chr22 (28626954-28627441)
               

               
               1-475, gnl|canFam2|chr20 (30230111-30229788)
               

               
               1-475, gnl|danRer3|chrUn (138326620-138326261)
               

               
               1-475, gnl|fr1|chrUn (91118810-91118401)
               

               
               1-475, gnl|galGal2|chr12 (13596609-13596944)
               

               
               1-475, gnl|hg17|chr3 (63956723-63957046)
               

               
               1-475, gnl|Hg17|chr3 (63956724-63957199)
               

               
               1-475, gnl|loxAfr1|scaffold_20238 (44210-43887)
               

               
               1-475, gnl|mm7|chr14 (11919320-11919628)
               

               
               1-475, gnl|Mm7|chr14 (11919321-11919781)
               

               
               1-475, gnl|monDom2|scaffold_5 (10097741-10098088)
               

               
               1-475, gnl|oryCun1|scaffold_202254 (220015-219711)
               

               
               1-475, gnl|panTro1|chrUn_random (24335634-24335311)
               

               
               1-475, gnl|rheMac2|chr3 (143032825-143032488)
               

               
               1-475, gnl|rn3|chr15 (12673271-12672963)
               

               
               1-475, gnl|tetNig1|chr11 (1736526-1736106)
               

               
               1-475, gnl|xenTro1|scaffold_908 (286696-286361)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-475, gnl|bosTau2|chr22 (28626954-28627441)
               

               
               1-475, gnl|canFam2|chr20 (30230111-30229788)
               

               
               1-475, gnl|danRer3|chrUn (138326620-138326261)
               

               
               1-475, gnl|fr1|chrUn (91118810-91118401)
               

               
               1-475, gnl|galGal2|chr12 (13596609-13596944)
               

               
               1-475, gnl|hg17|chr3 (63956723-63957046)
               

               
               1-475, gnl|Hg17|chr3 (63956724-63957199)
               

               
               1-475, gnl|loxAfr1|scaffold_20238 (44210-43887)
               

               
               1-475, gnl|mm7|chr14 (11919320-11919628)
               

               
               1-475, gnl|Mm7|chr14 (11919321-11919781)
               

               
               1-475, gnl|monDom2|scaffold_5 (10097741-10098088)
               

               
               1-475, gnl|oryCun1|scaffold_202254 (220015-219711)
               

               
               1-475, gnl|panTro1|chrUn_random (24335634-24335311)
               

               
               1-475, gnl|rheMac2|chr3 (143032825-143032488)
               

               
               1-475, gnl|rn3|chr15 (12673271-12672963)
               

               
               1-475, gnl|tetNig1|chr11 (1736526-1736106)
               

               
               1-475, gnl|xenTro1|scaffold_908 (286696-286361)

	1-475, gnl\|bosTau2\|chr22 (28626954-28627441)
	1-475, gnl\|canFam2\|chr20 (30230111-30229788)
	1-475, gnl\|danRer3\|chrUn (138326620-138326261)
	1-475, gnl\|fr1\|chrUn (91118810-91118401)
	1-475, gnl\|galGal2\|chr12 (13596609-13596944)
	1-475, gnl\|hg17\|chr3 (63956723-63957046)
	1-475, gnl\|Hg17\|chr3 (63956724-63957199)
	1-475, gnl\|loxAfr1\|scaffold_20238 (44210-43887)
	1-475, gnl\|mm7\|chr14 (11919320-11919628)
	1-475, gnl\|Mm7\|chr14 (11919321-11919781)
	1-475, gnl\|monDom2\|scaffold_5 (10097741-10098088)
	1-475, gnl\|oryCun1\|scaffold_202254 (220015-219711)
	1-475, gnl\|panTro1\|chrUn_random (24335634-24335311)
	1-475, gnl\|rheMac2\|chr3 (143032825-143032488)
	1-475, gnl\|rn3\|chr15 (12673271-12672963)
	1-475, gnl\|tetNig1\|chr11 (1736526-1736106)
	1-475, gnl\|xenTro1\|scaffold_908 (286696-286361)