Ss1.1-Pig1-90K16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGACGACTATGCTGCGGATGACAGCTGTGGACCGCGAGGCTATCTGGCCGCCACCATGC AGTTTGTCCCTGGCCATTTCTCCTGTGACGTGGTGTGGGGAACCGTGATCCGGGTCCATT CCCGCCTCAAAATGGGGCCCAGCATGGGGGTCTCTCGGGCCATCCAAGCCCTGCGCTCCG TGCTCAACGCCTTCTCTGTGGTGAACCGGAAGAACATGTTTGTGTATCAGGAGCGAGCAA CAAAGGCTGTGTACTACCTGCGGCTCCTGGAGACGTCCTGCACTGAACGCTCGTGGGACA GTGACACCCTGCCCCCGTCTCTAGCTCTGTCCCGAAGCCAGGAGCCCATCTACTCGGAGG ACACCTCGGGCCCTCGTTCTCCCCTGGACGTGGCTTCCAGCCGCGGTTCAGACGCCGCTC GTCCTGTGGGCCAAGTGGACAGACACATCCAGCTGCTGGTGCACGGCGTAGGGCAGGCAG GTCCCGAGATCACGGACGAGCTGGTGCGGGTTCTGCGTCGGCGCCTGGACGAGGCCACGC TGGACGTGATCACAGTCATGCTTGTCCGGAACTGCAAGCTGACCCCAGCCGATGTGGAGT TCATCCAGCCCCCCGGAAGTCTCCCCTCAGAGGTGCTGCACCTGGCGCTGCCCGCCTCCT GCAGGCCCTGGCTCCCTGCGCTGGCCTGGTACCTGCGGCAGAACCTGCTCGTCTTCCTGC ACTCCCCCAAGTACACGGACAGCAACAGCCGCAACCACTTCCAGCACCCACTCCCACCCC AGGGCGGCCTTCCTGACTGGGACATCTACCTGTACAACAAGCCTGGAGGACAGGGCACTG GGGGCAAAGGGGTCGCCTGCATCACTGTAGCTTTGGTGGATGAGGGAGGAGCCCCCATCT CACTGGCATCGTGGCCCCCCTCTTCTCCGGGACCCCCAGACTCACTGCAGGAGGAGGAAT TTGAGCAGCTGACTCAAGTCACGCGCTGCTCGGTTGTGCCAGACAATTCTTCAGCTCCGG ACGGGGCCCCGCGGCTGCGACTGGATGTGTGGGGCAAGGGGAACATCAGCATCGTGCAGC TGGAGGAGAAGCTCCGCGCAGCCGCCCGCCAGGCCCTGGCCGACGCCGTCATGGAGTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGACGACTATGCTGCGGATGACAGCTGTGGACCGCGAGGCTATCTGGCCGCCACCATGC AGTTTGTCCCTGGCCATTTCTCCTGTGACGTGGTGTGGGGAACCGTGATCCGGGTCCATT CCCGCCTCAAAATGGGGCCCAGCATGGGGGTCTCTCGGGCCATCCAAGCCCTGCGCTCCG TGCTCAACGCCTTCTCTGTGGTGAACCGGAAGAACATGTTTGTGTATCAGGAGCGAGCAA CAAAGGCTGTGTACTACCTGCGGCTCCTGGAGACGTCCTGCACTGAACGCTCGTGGGACA GTGACACCCTGCCCCCGTCTCTAGCTCTGTCCCGAAGCCAGGAGCCCATCTACTCGGAGG ACACCTCGGGCCCTCGTTCTCCCCTGGACGTGGCTTCCAGCCGCGGTTCAGACGCCGCTC GTCCTGTGGGCCAAGTGGACAGACACATCCAGCTGCTGGTGCACGGCGTAGGGCAGGCAG GTCCCGAGATCACGGACGAGCTGGTGCGGGTTCTGCGTCGGCGCCTGGACGAGGCCACGC TGGACGTGATCACAGTCATGCTTGTCCGGAACTGCAAGCTGACCCCAGCCGATGTGGAGT TCATCCAGCCCCCCGGAAGTCTCCCCTCAGAGGTGCTGCACCTGGCGCTGCCCGCCTCCT GCAGGCCCTGGCTCCCTGCGCTGGCCTGGTACCTGCGGCAGAACCTGCTCGTCTTCCTGC ACTCCCCCAAGTACACGGACAGCAACAGCCGCAACCACTTCCAGCACCCACTCCCACCCC AGGGCGGCCTTCCTGACTGGGACATCTACCTGTACAACAAGCCTGGAGGACAGGGCACTG GGGGCAAAGGGGTCGCCTGCATCACTGTAGCTTTGGTGGATGAGGGAGGAGCCCCCATCT CACTGGCATCGTGGCCCCCCTCTTCTCCGGGACCCCCAGACTCACTGCAGGAGGAGGAAT TTGAGCAGCTGACTCAAGTCACGCGCTGCTCGGTTGTGCCAGACAATTCTTCAGCTCCGG ACGGGGCCCCGCGGCTGCGACTGGATGTGTGGGGCAAGGGGAACATCAGCATCGTGCAGC TGGAGGAGAAGCTCCGCGCAGCCGCCCGCCAGGCCCTGGCCGACGCCGTCATGGAGTTCC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 595-713, - strand, RNAz p=0.672299 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 595-713, - strand, RNAz p=0.672299 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 6-159, gnl|bosTau2|chr3 (71791070-71791223) | |
| 6-159, gnl|Hg17|chr1 (43571934-43572087) | |
| 6-159, gnl|Mm7|chr4 (117754840-117754687) | |
| 595-764, gnl|bosTau2|chr3 (71792565-71792734) | |
| 595-764, gnl|canFam2|chr15 (19754251-19754033) | |
| 595-764, gnl|danRer3|chr22 (32568821-32569022) | |
| 595-764, gnl|echTel1|scaffold_321914 (65553-65767) | |
| 595-764, gnl|fr1|chrUn (241432211-241432413) | |
| 595-764, gnl|galGal2|chr8 (20047587-20047804) | |
| 595-764, gnl|hg17|chr1 (43573649-43573862) | |
| 595-764, gnl|Hg17|chr1 (43573688-43573857) | |
| 595-764, gnl|loxAfr1|scaffold_66843 (4795-4580) | |
| 595-764, gnl|mm7|chr4 (117752976-117752769) | |
| 595-764, gnl|Mm7|chr4 (117752940-117752772) | |
| 595-764, gnl|monDom2|scaffold_87 (36163-35958) | |
| 595-764, gnl|oryCun1|scaffold_158185 (34600-34389) | |
| 595-764, gnl|panTro1|chr1 (44553358-44553571) | |
| 595-764, gnl|rheMac2|chr1 (46346537-46346750) | |
| 595-764, gnl|rn3|chr5 (138861667-138861460) | |
| 595-764, gnl|tetNig1|chrUn_random (49613331-49613536) | |
| 595-764, gnl|xenTro1|scaffold_1 (5686188-5686393) | |
| 848-1014, gnl|bosTau2|chr3 (71793194-71793360) | |
| 848-1014, gnl|Hg17|chr1 (43574367-43574533) | |
| 848-1014, gnl|Mm7|chr4 (117752334-117752168) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-159, gnl|bosTau2|chr3 (71791070-71791223) | |
| 6-159, gnl|Hg17|chr1 (43571934-43572087) | |
| 6-159, gnl|Mm7|chr4 (117754840-117754687) | |
| 595-764, gnl|bosTau2|chr3 (71792565-71792734) | |
| 595-764, gnl|canFam2|chr15 (19754251-19754033) | |
| 595-764, gnl|danRer3|chr22 (32568821-32569022) | |
| 595-764, gnl|echTel1|scaffold_321914 (65553-65767) | |
| 595-764, gnl|fr1|chrUn (241432211-241432413) | |
| 595-764, gnl|galGal2|chr8 (20047587-20047804) | |
| 595-764, gnl|hg17|chr1 (43573649-43573862) | |
| 595-764, gnl|Hg17|chr1 (43573688-43573857) | |
| 595-764, gnl|loxAfr1|scaffold_66843 (4795-4580) | |
| 595-764, gnl|mm7|chr4 (117752976-117752769) | |
| 595-764, gnl|Mm7|chr4 (117752940-117752772) | |
| 595-764, gnl|monDom2|scaffold_87 (36163-35958) | |
| 595-764, gnl|oryCun1|scaffold_158185 (34600-34389) | |
| 595-764, gnl|panTro1|chr1 (44553358-44553571) | |
| 595-764, gnl|rheMac2|chr1 (46346537-46346750) | |
| 595-764, gnl|rn3|chr5 (138861667-138861460) | |
| 595-764, gnl|tetNig1|chrUn_random (49613331-49613536) | |
| 595-764, gnl|xenTro1|scaffold_1 (5686188-5686393) | |
| 848-1014, gnl|bosTau2|chr3 (71793194-71793360) | |
| 848-1014, gnl|Hg17|chr1 (43574367-43574533) | |
| 848-1014, gnl|Mm7|chr4 (117752334-117752168) |