Ss1.1-Pig1-92B05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCGGGTAGAGGTGTGAGGGAGACGAGGAACCTGAGCGGGAGCCGGGCCGGTGTGGCC GCCGCCGCCGCCATGCAGGAAATCATCGCCAGCGTGGACCATATCAAGTTCGACTTGGAG ATCGCAGTGGAGCAGCAGCTCGGAGCGCAGCCGCTGCCCTTCCCCGGCATGGACAAGTCG GGGGCTGCTGTCTGTGAATTCTTTCTGAAAGCTGCCTGTGGCAAAGGGGGCATGTGCCCG TTCCGCCACATCAGCGGCGAGAAGACAGTCGTGTGCAAACACTGGCTGCGGGGGCTGTGC AAGAAGGGCGACCAGTGCGAGTTCCTGCACGAGTACGACATGACCAAGATGCCCGAGTGC TACTTCTACTCCAAGTTCGGGGAGTGCAGCAACAAGGAGTGCCCCTTCCTGCACATCGAC CCCGAGTCCAAGATCAAAGACTGTCCATGGTACGACCGCGGCTTCTGCAAGCACGGCCCC CTGTGCAGGCACCGGCACACGCGGAGAGTCATCTGTGTGAATTACCTCGTGGGATTCTGC CCGGAGGGGCCCTCGTGCAAATTCATGCACCCTCGATTTGAACTGCCAATGGGAACCACG GAGCAGCCCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCGGGTAGAGGTGTGAGGGAGACGAGGAACCTGAGCGGGAGCCGGGCCGGTGTGGCC GCCGCCGCCGCCATGCAGGAAATCATCGCCAGCGTGGACCATATCAAGTTCGACTTGGAG ATCGCAGTGGAGCAGCAGCTCGGAGCGCAGCCGCTGCCCTTCCCCGGCATGGACAAGTCG GGGGCTGCTGTCTGTGAATTCTTTCTGAAAGCTGCCTGTGGCAAAGGGGGCATGTGCCCG TTCCGCCACATCAGCGGCGAGAAGACAGTCGTGTGCAAACACTGGCTGCGGGGGCTGTGC AAGAAGGGCGACCAGTGCGAGTTCCTGCACGAGTACGACATGACCAAGATGCCCGAGTGC TACTTCTACTCCAAGTTCGGGGAGTGCAGCAACAAGGAGTGCCCCTTCCTGCACATCGAC CCCGAGTCCAAGATCAAAGACTGTCCATGGTACGACCGCGGCTTCTGCAAGCACGGCCCC CTGTGCAGGCACCGGCACACGCGGAGAGTCATCTGTGTGAATTACCTCGTGGGATTCTGC CCGGAGGGGCCCTCGTGCAAATTCATGCACCCTCGATTTGAACTGCCAATGGGAACCACG GAGCAGCCCCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 225-343, + strand, RNAz p=0.822251 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 225-343, + strand, RNAz p=0.822251 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-175, gnl|bosTau2|chr25 (34811039-34810865) | |
| 1-175, gnl|Hg17|chr7 (98681286-98681459) | |
| 1-175, gnl|Mm7|chr5 (144195937-144196099) | |
| 225-384, gnl|bosTau2|chr25 (34807502-34807343) | |
| 225-384, gnl|canFam2|chr6 (13157646-13157448) | |
| 225-384, gnl|danRer3|chr3 (37613262-37613079) | |
| 225-384, gnl|dasNov1|scaffold_914 (35564-35768) | |
| 225-384, gnl|echTel1|scaffold_210295 (4029-4236) | |
| 225-384, gnl|fr1|chrUn (208156070-208155887) | |
| 225-384, gnl|galGal2|chr14 (6500699-6500896) | |
| 225-384, gnl|hg17|chr7 (98690359-98690566) | |
| 225-384, gnl|Hg17|chr7 (98690393-98690552) | |
| 225-384, gnl|loxAfr1|scaffold_5739 (8577-8774) | |
| 225-384, gnl|mm7|chr5 (144201927-144202118) | |
| 225-384, gnl|Mm7|chr5 (144201945-144202104) | |
| 225-384, gnl|monDom2|scaffold_17 (6807970-6808168) | |
| 225-384, gnl|oryCun1|scaffold_215315 (3954-4147) | |
| 225-384, gnl|panTro1|chr6 (100396702-100396909) | |
| 225-384, gnl|rheMac2|chr3 (46654875-46655082) | |
| 225-384, gnl|rn3|chr12 (9783138-9782943) | |
| 225-384, gnl|tetNig1|chrUn_random (38814487-38814651) | |
| 225-384, gnl|xenTro1|scaffold_48 (1529182-1529356) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-175, gnl|bosTau2|chr25 (34811039-34810865) | |
| 1-175, gnl|Hg17|chr7 (98681286-98681459) | |
| 1-175, gnl|Mm7|chr5 (144195937-144196099) | |
| 225-384, gnl|bosTau2|chr25 (34807502-34807343) | |
| 225-384, gnl|canFam2|chr6 (13157646-13157448) | |
| 225-384, gnl|danRer3|chr3 (37613262-37613079) | |
| 225-384, gnl|dasNov1|scaffold_914 (35564-35768) | |
| 225-384, gnl|echTel1|scaffold_210295 (4029-4236) | |
| 225-384, gnl|fr1|chrUn (208156070-208155887) | |
| 225-384, gnl|galGal2|chr14 (6500699-6500896) | |
| 225-384, gnl|hg17|chr7 (98690359-98690566) | |
| 225-384, gnl|Hg17|chr7 (98690393-98690552) | |
| 225-384, gnl|loxAfr1|scaffold_5739 (8577-8774) | |
| 225-384, gnl|mm7|chr5 (144201927-144202118) | |
| 225-384, gnl|Mm7|chr5 (144201945-144202104) | |
| 225-384, gnl|monDom2|scaffold_17 (6807970-6808168) | |
| 225-384, gnl|oryCun1|scaffold_215315 (3954-4147) | |
| 225-384, gnl|panTro1|chr6 (100396702-100396909) | |
| 225-384, gnl|rheMac2|chr3 (46654875-46655082) | |
| 225-384, gnl|rn3|chr12 (9783138-9782943) | |
| 225-384, gnl|tetNig1|chrUn_random (38814487-38814651) | |
| 225-384, gnl|xenTro1|scaffold_48 (1529182-1529356) |