Ss1.1-Pig1-92D15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCGGCGGCCGTGCGCTGACGGACGTGCCCGAAGCGCCGCAGCCGCCCGCAGCCGAGCC GGGCCGCGCCCGCCCGCTCGCCCCCCGCCATGGTGGCATGGATCATCTCCAGGCTGGTGG TGCTGATATTTGGCACCCTTTACCCTGCGTATTATTCCTATAAGGCCGTGAAATCAAAGG ACATTAAAGAATATGTCAAATGGATGATGTACTGGATTATATTTGCACTTTTCACCACAG CAGAGACATTCACCGACATCTTCCTTTGTTGGTTTCCATTCTATTATGAACTAAAAATAG CATTTGTAGCCTGGTTGCTGTCTCCTTATACAAAAGGCTCCAGCCTCCTCTACAGGAAGT TTGTACATCCCACGCTGTCCTCAAAAGAAAAGGAAATCGATGATTGCCTGGTCCAAGCAA AAGACCGAAGTTACGACGCCCTTGTGCACTTCGGGAAGCGAGGCTTGAATGTGGCCGCCA CGGCGGCAGTGATGGCTGCTTCCAAGGGACAAGGTGCCTTATCAGAGAGACTCCGGAGCT TCAGCATGCAGGACCTCAGCACCATCAGGGGAGATGGCGCCCCAGCTCCCTCAGGTCCAC CCGCACCGGGGCCTGGGCGGGCCAGCGGCAAACACGGCCAGCCCAAGATGTCCCGGAGTG CTTCTGAGAGCGCTGGCAGCTCAGGTAGGTGTCACTTCACTGCCCCTCTTTTCCACCTCG TAGGTGGGACCTCTTAGGCCATATGGCCCTTGCCTCAAGGACCTGCCACCAACGCAGACA TCCACCAGACCATGCCAGGCCAGCCAAGGGGTAGAGCACTACTCAAGCCAGGACAGGAAG CTGGCCTTGGGGGCTCTCGCCAGGGGCTGGGTTAGGTCACCTGCACCAGAGGGCCCCCCT TCCTCCATCTGATTGTCTAGAGAGTTGGGGCGGTTGAGCAGTACCTGGACCAAACCCAGA GGCGACAGGCCCAGCTGGACTTGGGTCAAGGCAGCTTTCTCTGTTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCGGCGGCCGTGCGCTGACGGACGTGCCCGAAGCGCCGCAGCCGCCCGCAGCCGAGCC GGGCCGCGCCCGCCCGCTCGCCCCCCGCCATGGTGGCATGGATCATCTCCAGGCTGGTGG TGCTGATATTTGGCACCCTTTACCCTGCGTATTATTCCTATAAGGCCGTGAAATCAAAGG ACATTAAAGAATATGTCAAATGGATGATGTACTGGATTATATTTGCACTTTTCACCACAG CAGAGACATTCACCGACATCTTCCTTTGTTGGTTTCCATTCTATTATGAACTAAAAATAG CATTTGTAGCCTGGTTGCTGTCTCCTTATACAAAAGGCTCCAGCCTCCTCTACAGGAAGT TTGTACATCCCACGCTGTCCTCAAAAGAAAAGGAAATCGATGATTGCCTGGTCCAAGCAA AAGACCGAAGTTACGACGCCCTTGTGCACTTCGGGAAGCGAGGCTTGAATGTGGCCGCCA CGGCGGCAGTGATGGCTGCTTCCAAGGGACAAGGTGCCTTATCAGAGAGACTCCGGAGCT TCAGCATGCAGGACCTCAGCACCATCAGGGGAGATGGCGCCCCAGCTCCCTCAGGTCCAC CCGCACCGGGGCCTGGGCGGGCCAGCGGCAAACACGGCCAGCCCAAGATGTCCCGGAGTG CTTCTGAGAGCGCTGGCAGCTCAGGTAGGTGTCACTTCACTGCCCCTCTTTTCCACCTCG TAGGTGGGACCTCTTAGGCCATATGGCCCTTGCCTCAAGGACCTGCCACCAACGCAGACA TCCACCAGACCATGCCAGGCCAGCCAAGGGGTAGAGCACTACTCAAGCCAGGACAGGAAG CTGGCCTTGGGGGCTCTCGCCAGGGGCTGGGTTAGGTCACCTGCACCAGAGGGCCCCCCT TCCTCCATCTGATTGTCTAGAGAGTTGGGGCGGTTGAGCAGTACCTGGACCAAACCCAGA GGCGACAGGCCCAGCTGGACTTGGGTCAAGGCAGCTTTCTCTGTTTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 271-397, - strand, RNAz p=0.936471 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 271-397, - strand, RNAz p=0.936471 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-122, gnl|bosTau2|chr11 (35082704-35082584) | |
| 1-122, gnl|Hg17|chr2 (86476400-86476259) | |
| 1-122, gnl|Mm7|chr6 (71725808-71725933) | |
| 271-397, gnl|bosTau2|chr11 (36469607-36469733) | |
| 271-397, gnl|canFam2|chr17 (41938696-41938568) | |
| 271-397, gnl|danRer3|chrNA (216242070-216241942) | |
| 271-397, gnl|dasNov1|scaffold_43349 (7111-6983) | |
| 271-397, gnl|echTel1|scaffold_323782 (47404-47532) | |
| 271-397, gnl|fr1|chrUn (69866182-69866310) | |
| 271-397, gnl|galGal2|chr4 (85613866-85613994) | |
| 271-397, gnl|hg17|chr2 (86393471-86393599) | |
| 271-397, gnl|Hg17|chr2 (86393596-86393470) | |
| 271-397, gnl|loxAfr1|scaffold_14699 (4180-4308) | |
| 271-397, gnl|mm7|chr6 (71791245-71791117) | |
| 271-397, gnl|Mm7|chr6 (71791118-71791244) | |
| 271-397, gnl|monDom2|scaffold_63 (502639-502767) | |
| 271-397, gnl|oryCun1|scaffold_92506 (1179-1307) | |
| 271-397, gnl|panTro1|chr12_random (30531040-30530912) | |
| 271-397, gnl|rheMac2|chr13 (86840490-86840618) | |
| 271-397, gnl|rn3|chr4 (105305829-105305701) | |
| 271-397, gnl|tetNig1|chr10 (5444753-5444625) | |
| 271-397, gnl|xenTro1|scaffold_149 (603248-603375) | |
| 497-1006, gnl|bosTau2|chr11 (36494011-36494543) | |
| 497-1006, gnl|Hg17|chr2 (86371592-86371056) | |
| 497-1006, gnl|Mm7|chr6 (71813069-71813558) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-122, gnl|bosTau2|chr11 (35082704-35082584) | |
| 1-122, gnl|Hg17|chr2 (86476400-86476259) | |
| 1-122, gnl|Mm7|chr6 (71725808-71725933) | |
| 271-397, gnl|bosTau2|chr11 (36469607-36469733) | |
| 271-397, gnl|canFam2|chr17 (41938696-41938568) | |
| 271-397, gnl|danRer3|chrNA (216242070-216241942) | |
| 271-397, gnl|dasNov1|scaffold_43349 (7111-6983) | |
| 271-397, gnl|echTel1|scaffold_323782 (47404-47532) | |
| 271-397, gnl|fr1|chrUn (69866182-69866310) | |
| 271-397, gnl|galGal2|chr4 (85613866-85613994) | |
| 271-397, gnl|hg17|chr2 (86393471-86393599) | |
| 271-397, gnl|Hg17|chr2 (86393596-86393470) | |
| 271-397, gnl|loxAfr1|scaffold_14699 (4180-4308) | |
| 271-397, gnl|mm7|chr6 (71791245-71791117) | |
| 271-397, gnl|Mm7|chr6 (71791118-71791244) | |
| 271-397, gnl|monDom2|scaffold_63 (502639-502767) | |
| 271-397, gnl|oryCun1|scaffold_92506 (1179-1307) | |
| 271-397, gnl|panTro1|chr12_random (30531040-30530912) | |
| 271-397, gnl|rheMac2|chr13 (86840490-86840618) | |
| 271-397, gnl|rn3|chr4 (105305829-105305701) | |
| 271-397, gnl|tetNig1|chr10 (5444753-5444625) | |
| 271-397, gnl|xenTro1|scaffold_149 (603248-603375) | |
| 497-1006, gnl|bosTau2|chr11 (36494011-36494543) | |
| 497-1006, gnl|Hg17|chr2 (86371592-86371056) | |
| 497-1006, gnl|Mm7|chr6 (71813069-71813558) |