Non-Coding RNA Search

Ss1.1-Pig1-93A14.5

Sequence:


               
               ATTTTGATTCAGGTGAGAATTCACCATCTTGAACTCATTGTCTGGTTTCAGTAGCAGTTT
GGAAATCTTAGTACATTTTTAATAGCATGTGGATGTCAGTGCCATTAAGTTCCTGTGAAG
ACTGTTTGAGCCTCTTAGTTTAGAGGTTCAAGGAATTTTGAAATAAAAGGTGACATCCTA
ATGACACTCTCGGAGTTATTCATATGATCACAAAATTATTTTCCTAAATCAGCATTTTTC
TTAAAGCTGTGTAATCATTTAGAAATTACTAGTAACTATTTGCTCAGTATGACCTTAACA
TCCTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGGGGGGGGGCCCCTTTTTTTTTTTTTTGGGGGGGGGGCCCCT
TTCCCCCCCCCCCTTTTTTTTTTTAAAAGGGGCCCCCTTTTGGGGGGTTTTTTTAACCCC
CCCCCCCCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTGATTCAGGTGAGAATTCACCATCTTGAACTCATTGTCTGGTTTCAGTAGCAGTTT
GGAAATCTTAGTACATTTTTAATAGCATGTGGATGTCAGTGCCATTAAGTTCCTGTGAAG
ACTGTTTGAGCCTCTTAGTTTAGAGGTTCAAGGAATTTTGAAATAAAAGGTGACATCCTA
ATGACACTCTCGGAGTTATTCATATGATCACAAAATTATTTTCCTAAATCAGCATTTTTC
TTAAAGCTGTGTAATCATTTAGAAATTACTAGTAACTATTTGCTCAGTATGACCTTAACA
TCCTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGGGGGGGGGCCCCTTTTTTTTTTTTTTGGGGGGGGGGCCCCT
TTCCCCCCCCCCCTTTTTTTTTTTAAAAGGGGCCCCCTTTTGGGGGGTTTTTTTAACCCC
CCCCCCCCCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-184, + strand, RNAz p=0.581683

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-184, + strand, RNAz p=0.581683

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004898, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004898, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-319, gnl|bosTau2|chr6 (39114826-39115147)
               

               
               1-319, gnl|Hg17|chr4 (56141297-56140976)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-319, gnl|bosTau2|chr6 (39114826-39115147)
               

               
               1-319, gnl|Hg17|chr4 (56141297-56140976)

	1-319, gnl\|bosTau2\|chr6 (39114826-39115147)
	1-319, gnl\|Hg17\|chr4 (56141297-56140976)