Non-Coding RNA Search

Ss1.1-Pig1-93C24.5

Sequence:


               
               GCCAGACTCTCTCTGGAGCTTAGGACATTTCACAGTTCTGAATGTCAGCAACTGAAAATG
CCTGTAGACGATGAAGCATCTGAAGATGACTCGGATTCAGTTTCTTCAAACAGTGAAAGA
ATCTGCATTTCCAAACGAGAGAGTGTAACAATTTCTGTACACTATGGAAGATTTTGACTT
GGGGAAACCCTTACAAAAAGCGTCATCTTCTGTAGAATCCAAGATAAAAAATTCTTCCCA
TTCTCTTGAACTGAACTTAAATACTACTAATAGGTAAGAATGAGATAGATTTCTCTTTTT
TTGAGTAATGACATATCAAAATAATTTAATTTGCATAGTTTACCAGTTTCCCCAAATGGT
ATCATAGTTGCTGATTTGCATTTAAAAAGTCACAAAACTATGGTAACTGTTGAGGGACCA
TTGTTTCAGTTAAGAAAATTTCAGTCCTTTCATGTTCTTCATTTCTCCCAGAGATGTACT
TTTACATGGGGAACATTGTGAGAAGAACTTGTTTGGCTAGTTGGAGTTTTCTTTACACTT
TTGTTGTTTTTGTTAAGTGACAAGCATGGTCTTTAAAATTTAGTTGCCTAACTATTATTC
TCCATTTTGAAATTAAGAGGGTGAATAGTTTCACATTGCAGTAATACCTCACCAATCTGG
ACAATAGCAATTAAAGTTGAATGCTGGGAAGTAGCAAAACAGGCTGTGAGTTGACAAAAA
TAGATGCTATCAAACAGCATTTTAAGCATTTTCCTTTTAAATTATTCCATGTTTGGTTTG
CTTTTAATCAGGTCCTGTTTACTCTCATTTTGTACATAGACTGATAAGTTGAATTATTTG
GTTTCTAAATTTACAGTAGCTTAAAAACAAAGTGGCAGGGACCATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGACTCTCTCTGGAGCTTAGGACATTTCACAGTTCTGAATGTCAGCAACTGAAAATG
CCTGTAGACGATGAAGCATCTGAAGATGACTCGGATTCAGTTTCTTCAAACAGTGAAAGA
ATCTGCATTTCCAAACGAGAGAGTGTAACAATTTCTGTACACTATGGAAGATTTTGACTT
GGGGAAACCCTTACAAAAAGCGTCATCTTCTGTAGAATCCAAGATAAAAAATTCTTCCCA
TTCTCTTGAACTGAACTTAAATACTACTAATAGGTAAGAATGAGATAGATTTCTCTTTTT
TTGAGTAATGACATATCAAAATAATTTAATTTGCATAGTTTACCAGTTTCCCCAAATGGT
ATCATAGTTGCTGATTTGCATTTAAAAAGTCACAAAACTATGGTAACTGTTGAGGGACCA
TTGTTTCAGTTAAGAAAATTTCAGTCCTTTCATGTTCTTCATTTCTCCCAGAGATGTACT
TTTACATGGGGAACATTGTGAGAAGAACTTGTTTGGCTAGTTGGAGTTTTCTTTACACTT
TTGTTGTTTTTGTTAAGTGACAAGCATGGTCTTTAAAATTTAGTTGCCTAACTATTATTC
TCCATTTTGAAATTAAGAGGGTGAATAGTTTCACATTGCAGTAATACCTCACCAATCTGG
ACAATAGCAATTAAAGTTGAATGCTGGGAAGTAGCAAAACAGGCTGTGAGTTGACAAAAA
TAGATGCTATCAAACAGCATTTTAAGCATTTTCCTTTTAAATTATTCCATGTTTGGTTTG
CTTTTAATCAGGTCCTGTTTACTCTCATTTTGTACATAGACTGATAAGTTGAATTATTTG
GTTTCTAAATTTACAGTAGCTTAAAAACAAAGTGGCAGGGACCATTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               123-242, + strand, RNAz p=0.835501

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-242, + strand, RNAz p=0.835501

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               89-183, + strand, RNAmicro p=0.953847

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               89-183, + strand, RNAmicro p=0.953847

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-852, gnl|bosTau2|chr17 (26313770-26312914)
               

               
               3-852, gnl|Hg17|chr12 (122239952-122238726)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-852, gnl|bosTau2|chr17 (26313770-26312914)
               

               
               3-852, gnl|Hg17|chr12 (122239952-122238726)

	3-852, gnl\|bosTau2\|chr17 (26313770-26312914)
	3-852, gnl\|Hg17\|chr12 (122239952-122238726)