Non-Coding RNA Search

Ss1.1-Pig1-93H12.5

Sequence:


               
               AATCCTGTGGATTGTCTTCGCCGTGGTCTCCCTCCTAGAAAATTGACCACCAGAGGACAA
ACACTCAAACATCCTGTGCTCCAGTCACAGCCATCTCTATCCTTCCCTGAGGAGCTACCA
AAAACCTCAGGAAGACTTGCTATCGCTAGGAGAAACTGAGGCAGAACGGGCAAGGCTGCT
GTTTTCCTTAAGTCGGATTTGTGGACGCCCAGCCTCTTAACCTCCTACTCCCAGATACTG
CGTCCCTATGGTGGCTCCTGGCTAGAAGCATGGATTTCAGAACCCCTGACCTACTGGATG
TGTGGCTGGAGCCCCCAGAAGATGTCTTCTCAACAGGATCCTTCCCCGAGCTGGGACTCC
ACTGTTCACCTCCAGAGGTCCCAGTGACTAGGCTACAAGAACAGGAGCTCCAAGGCTGGG
AGTCCAGTGGGGGCCGTGGCTGTGTGGTGCCTGATGCCTGCGTGGTCAGTGAGCTGCCTC
CTGATGCTCATGCCCACATCCTGCCCGGAGCTGGTGCTGCAAACCCAGTGCCTCCTGTGG
CCCTGCTGCCCTGCCAAGCCTTGTTCCTGACAGATGAGGAGAAACGTCTGCTGGGACAGG
AAGGGGTCTCCCTGCCCTCTCACCTGCCCCTCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCCTGTGGATTGTCTTCGCCGTGGTCTCCCTCCTAGAAAATTGACCACCAGAGGACAA
ACACTCAAACATCCTGTGCTCCAGTCACAGCCATCTCTATCCTTCCCTGAGGAGCTACCA
AAAACCTCAGGAAGACTTGCTATCGCTAGGAGAAACTGAGGCAGAACGGGCAAGGCTGCT
GTTTTCCTTAAGTCGGATTTGTGGACGCCCAGCCTCTTAACCTCCTACTCCCAGATACTG
CGTCCCTATGGTGGCTCCTGGCTAGAAGCATGGATTTCAGAACCCCTGACCTACTGGATG
TGTGGCTGGAGCCCCCAGAAGATGTCTTCTCAACAGGATCCTTCCCCGAGCTGGGACTCC
ACTGTTCACCTCCAGAGGTCCCAGTGACTAGGCTACAAGAACAGGAGCTCCAAGGCTGGG
AGTCCAGTGGGGGCCGTGGCTGTGTGGTGCCTGATGCCTGCGTGGTCAGTGAGCTGCCTC
CTGATGCTCATGCCCACATCCTGCCCGGAGCTGGTGCTGCAAACCCAGTGCCTCCTGTGG
CCCTGCTGCCCTGCCAAGCCTTGTTCCTGACAGATGAGGAGAAACGTCTGCTGGGACAGG
AAGGGGTCTCCCTGCCCTCTCACCTGCCCCTCACCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               262-381, - strand, RNAz p=0.919122

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               262-381, - strand, RNAz p=0.919122

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               221-446, gnl|bosTau2|chr3 (8149645-8149871)
               

               
               221-446, gnl|canFam2|chr7 (46140385-46140141)
               

               
               221-446, gnl|dasNov1|scaffold_8489 (3459-3140)
               

               
               221-446, gnl|echTel1|scaffold_307301 (17038-16695)
               

               
               221-446, gnl|hg17|chr1 (150753960-150754285)
               

               
               221-446, gnl|Hg17|chr1 (150754025-150754251)
               

               
               221-446, gnl|mm7|chr3 (90373666-90373375)
               

               
               221-446, gnl|Mm7|chr3 (90373603-90373403)
               

               
               221-446, gnl|monDom2|scaffold_59 (4109254-4108924)
               

               
               221-446, gnl|oryCun1|scaffold_198987 (39064-38757)
               

               
               221-446, gnl|panTro1|chr1 (132735187-132735515)
               

               
               221-446, gnl|rheMac2|chr1 (132484750-132485075)
               

               
               221-446, gnl|rn3|chr2 (182432442-182432152)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               221-446, gnl|bosTau2|chr3 (8149645-8149871)
               

               
               221-446, gnl|canFam2|chr7 (46140385-46140141)
               

               
               221-446, gnl|dasNov1|scaffold_8489 (3459-3140)
               

               
               221-446, gnl|echTel1|scaffold_307301 (17038-16695)
               

               
               221-446, gnl|hg17|chr1 (150753960-150754285)
               

               
               221-446, gnl|Hg17|chr1 (150754025-150754251)
               

               
               221-446, gnl|mm7|chr3 (90373666-90373375)
               

               
               221-446, gnl|Mm7|chr3 (90373603-90373403)
               

               
               221-446, gnl|monDom2|scaffold_59 (4109254-4108924)
               

               
               221-446, gnl|oryCun1|scaffold_198987 (39064-38757)
               

               
               221-446, gnl|panTro1|chr1 (132735187-132735515)
               

               
               221-446, gnl|rheMac2|chr1 (132484750-132485075)
               

               
               221-446, gnl|rn3|chr2 (182432442-182432152)

	221-446, gnl\|bosTau2\|chr3 (8149645-8149871)
	221-446, gnl\|canFam2\|chr7 (46140385-46140141)
	221-446, gnl\|dasNov1\|scaffold_8489 (3459-3140)
	221-446, gnl\|echTel1\|scaffold_307301 (17038-16695)
	221-446, gnl\|hg17\|chr1 (150753960-150754285)
	221-446, gnl\|Hg17\|chr1 (150754025-150754251)
	221-446, gnl\|mm7\|chr3 (90373666-90373375)
	221-446, gnl\|Mm7\|chr3 (90373603-90373403)
	221-446, gnl\|monDom2\|scaffold_59 (4109254-4108924)
	221-446, gnl\|oryCun1\|scaffold_198987 (39064-38757)
	221-446, gnl\|panTro1\|chr1 (132735187-132735515)
	221-446, gnl\|rheMac2\|chr1 (132484750-132485075)
	221-446, gnl\|rn3\|chr2 (182432442-182432152)