Ss1.1-Pig1-93J17.5
|
AACCAAGCCTGGCAGATGGGGGCTTGGTTAAAGGAAGAAGGGGAGGGGGGTGCTGCTGTT
NTCTCCTGTCCAGAGTCCCCTCTCACACTTCACCTCCTTCTGCAGTCAGACTGAAAAATA
AAAAGGTGGTGGTGGTTAAGGGGAGGGGGGAGATGTAGGAACCCATCTGCTATTTTTAAT
TTCCTCTGAGGATAGAGACTTGCAGTTAGACTCAAAGAAGTACTGTACTTTCCCAGGTTG
ACTAAGAAATGCCAGTGGTGGAGGTGGTATTTGGGAAAGGCAGGGCCCTGAGATGTCTGT
CCCTGGGGCTCTTCAGCACTGGCCTTGCCCCCCCCCCCCAGCCCCTCCTGTCTAACTTTG
GGAAGGGGCCTGGGCTGTGATGGCAGGGCAGGGGTGCTCCGGTGAGTAGTCCTCACGCCC
TAACCGTCACAGTTCTGCCCCCAGCCCTGGGCGCACACAGTGTAGGCCGCGAACACAGGA
TCCTGGCCTGAAACTTGAGGGGGGTTGGCCCGCCAACAAAGACGGGCTGCAGGGGATGCA
TGATTTTTGCCCTGCAGCTCTTCTCTCCGGGGTTCCTTTCCCCTCTCTTTCACTCACTTA
AAAGTCGCTTTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AACCAAGCCTGGCAGATGGGGGCTTGGTTAAAGGAAGAAGGGGAGGGGGGTGCTGCTGTT
NTCTCCTGTCCAGAGTCCCCTCTCACACTTCACCTCCTTCTGCAGTCAGACTGAAAAATA
AAAAGGTGGTGGTGGTTAAGGGGAGGGGGGAGATGTAGGAACCCATCTGCTATTTTTAAT
TTCCTCTGAGGATAGAGACTTGCAGTTAGACTCAAAGAAGTACTGTACTTTCCCAGGTTG
ACTAAGAAATGCCAGTGGTGGAGGTGGTATTTGGGAAAGGCAGGGCCCTGAGATGTCTGT
CCCTGGGGCTCTTCAGCACTGGCCTTGCCCCCCCCCCCCAGCCCCTCCTGTCTAACTTTG
GGAAGGGGCCTGGGCTGTGATGGCAGGGCAGGGGTGCTCCGGTGAGTAGTCCTCACGCCC
TAACCGTCACAGTTCTGCCCCCAGCCCTGGGCGCACACAGTGTAGGCCGCGAACACAGGA
TCCTGGCCTGAAACTTGAGGGGGGTTGGCCCGCCAACAAAGACGGGCTGCAGGGGATGCA
TGATTTTTGCCCTGCAGCTCTTCTCTCCGGGGTTCCTTTCCCCTCTCTTTCACTCACTTA
AAAGTCGCTTTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
359-460, + strand, RNAmicro p=0.999999 |
|
507-595, + strand, RNAmicro p=0.999994 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
359-460, + strand, RNAmicro p=0.999999 |
|
507-595, + strand, RNAmicro p=0.999994 |
|
1-313, gnl|bosTau2|chr23 (5564996-5565286) |
|
1-313, gnl|Hg17|chr6 (33269980-33269631) |
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1-313, gnl|Mm7|chr17 (32116774-32117055) |
| |
|
349-612, gnl|bosTau2|chr23 (5565288-5565541) |
|
349-612, gnl|canFam2|chr12 (5660460-5660766) |
|
349-612, gnl|echTel1|scaffold_220816 (7301-6977) |
|
349-612, gnl|hg17|chr6 (33269359-33269683) |
|
349-612, gnl|Hg17|chr6 (33269629-33269367) |
|
349-612, gnl|mm7|chr17 (32117241-32117042) |
|
349-612, gnl|monDom2|scaffold_42 (15267782-15267409) |
|
349-612, gnl|oryCun1|scaffold_10258 (831-1122) |
|
349-612, gnl|panTro1|chr5 (33714570-33714895) |
|
349-612, gnl|rheMac2|chr4 (32908051-32908374) |
|
349-612, gnl|rn3|chr20 (4954564-4954800) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-313, gnl|bosTau2|chr23 (5564996-5565286) |
|
1-313, gnl|Hg17|chr6 (33269980-33269631) |
|
1-313, gnl|Mm7|chr17 (32116774-32117055) |
| |
|
349-612, gnl|bosTau2|chr23 (5565288-5565541) |
|
349-612, gnl|canFam2|chr12 (5660460-5660766) |
|
349-612, gnl|echTel1|scaffold_220816 (7301-6977) |
|
349-612, gnl|hg17|chr6 (33269359-33269683) |
|
349-612, gnl|Hg17|chr6 (33269629-33269367) |
|
349-612, gnl|mm7|chr17 (32117241-32117042) |
|
349-612, gnl|monDom2|scaffold_42 (15267782-15267409) |
|
349-612, gnl|oryCun1|scaffold_10258 (831-1122) |
|
349-612, gnl|panTro1|chr5 (33714570-33714895) |
|
349-612, gnl|rheMac2|chr4 (32908051-32908374) |
|
349-612, gnl|rn3|chr20 (4954564-4954800) |
