Non-Coding RNA Search

Ss1.1-Pig1-94A16.5

Sequence:


               
               AGGCATGATCCTGCTGAATGTTGGCCTTCAGGAACCTGCAGCTGGGGACCCTGTGGCCGT
CGTACGTGCCCCAGACGGCCGTGCCCTGACGCTGGAGTCCTGCTTGAGGCAGCTGGCCAT
GCGCCCTGGATCCTGGGGCGTCCACTTGCACATGGCAGTGCCCACAGCCCTCCGGCCATC
CCTGGCCACACTGGCCAACCTCTCCGCCCTTGGCCACCTGCTTAGGCCTGTGTGGGTTGG
GGCCACAATCTCTCACGGGAGTTTTGTGGCCCCTGGCTACGTGACCGGCAGGGAACTGCT
TGCAGCTGTGGCTGAGGTTTTCCCCCACGTGACCGTGGCACCAGGCTGGCCCGAGGAAGT
GCTGGGCAGTGGCTACAGGGAACAGCTGGTCACAGACATGCTGGAGCTGTGCCAGGGCCT
CTGGCAACCTGTGTCCTTCCAGCTGCAGGCTGGGCCGCTGGGCCAGAGCACAGCTGGGGT
CGTGGCCAGGCTGCTGGCGGCGTCGCCCCGGGCCACTGTCACAGTGGAACACAGCCCTGG
CCGGGGCCACTATGCATCTGTGCGGGCAGCGCTCCTGGCAGCCAGGGCTGTGGACAAGAC
CCGAGTCTACTACAGGCTACCCCAGAGTGACCGTGCAGACTTGCTGGCCGATGTGGGCAG
AAACTGACCACCCAGGGGTGCTGGGCAGCAGACCCCCGGGTCAAGGCTTCCCACGGGGGA
GGCGGGAAGGAATAAATGCCTCTGTCTTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGGGGGGGGCCTTTTAAAATTTTCCTGGGGGGGGCCAAATTTTCCCCCCC
CCCTTTTTTTTTGAAAAAGGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCATGATCCTGCTGAATGTTGGCCTTCAGGAACCTGCAGCTGGGGACCCTGTGGCCGT
CGTACGTGCCCCAGACGGCCGTGCCCTGACGCTGGAGTCCTGCTTGAGGCAGCTGGCCAT
GCGCCCTGGATCCTGGGGCGTCCACTTGCACATGGCAGTGCCCACAGCCCTCCGGCCATC
CCTGGCCACACTGGCCAACCTCTCCGCCCTTGGCCACCTGCTTAGGCCTGTGTGGGTTGG
GGCCACAATCTCTCACGGGAGTTTTGTGGCCCCTGGCTACGTGACCGGCAGGGAACTGCT
TGCAGCTGTGGCTGAGGTTTTCCCCCACGTGACCGTGGCACCAGGCTGGCCCGAGGAAGT
GCTGGGCAGTGGCTACAGGGAACAGCTGGTCACAGACATGCTGGAGCTGTGCCAGGGCCT
CTGGCAACCTGTGTCCTTCCAGCTGCAGGCTGGGCCGCTGGGCCAGAGCACAGCTGGGGT
CGTGGCCAGGCTGCTGGCGGCGTCGCCCCGGGCCACTGTCACAGTGGAACACAGCCCTGG
CCGGGGCCACTATGCATCTGTGCGGGCAGCGCTCCTGGCAGCCAGGGCTGTGGACAAGAC
CCGAGTCTACTACAGGCTACCCCAGAGTGACCGTGCAGACTTGCTGGCCGATGTGGGCAG
AAACTGACCACCCAGGGGTGCTGGGCAGCAGACCCCCGGGTCAAGGCTTCCCACGGGGGA
GGCGGGAAGGAATAAATGCCTCTGTCTTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGGGGGGGGCCTTTTAAAATTTTCCTGGGGGGGGCCAAATTTTCCCCCCC
CCCTTTTTTTTTGAAAAAGGGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|49522673|gb|AAH73921.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49522673|gb|AAH73921.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-599, + strand, RNAz p=0.999517

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-599, + strand, RNAz p=0.999517

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-751, gnl|bosTau2|chr3 (60558417-60559153)
               

               
               1-751, gnl|Hg17|chr1 (54787628-54786878)
               

               
               1-751, gnl|Mm7|chr4 (106123985-106124728)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-751, gnl|bosTau2|chr3 (60558417-60559153)
               

               
               1-751, gnl|Hg17|chr1 (54787628-54786878)
               

               
               1-751, gnl|Mm7|chr4 (106123985-106124728)

	1-751, gnl\|bosTau2\|chr3 (60558417-60559153)
	1-751, gnl\|Hg17\|chr1 (54787628-54786878)
	1-751, gnl\|Mm7\|chr4 (106123985-106124728)