Non-Coding RNA Search

Ss1.1-Pig1-95D03.5

Sequence:


               
               TTTCGCAGACTTAAGGAAGGTCCAGAGCCGTCTGGTGTGGTTTGAAGGAGAATAGGGAGG
GTGACAACTTGGGGGGCGAGGCTAAGCGCTGGTGGGTGGAGCCCTAACGAAGGAAGCCGA
GCTTGGGGCGGAGCTGGCGCAAAGCGTGGGCGGAACTATCTTTGGGGGTGGAGCCTAAGT
TGTTTGGGGGTTCAGATCCTGCCAGCTGCTGGGTGGTTGTTGGCGCGTCCGGGGGGCCCA
GAATGAGTGAGACAAGATTAGTGGCCTCGGACTCTTATCCATCTCTACAGGCGCTCGCCC
CCTCACCCGCCTCGACCACTCCCCAGATTTGGTGAGACTAACTCTACCCATTATCCTTCT
CCGCGTATTCCCCACCCAATTCCTGAGTCTGAGCCCTTGTTGGTTACCTTCTCTCAATCC
TTCAGCTCTGTCCCCCTCACATAGTTCCACTTGTGGATACTGAGCCCCAGAGGCTAGAAG
AGGAGGAAGACCCCAAGATTGCAGGGGACTTGGACCAGGAGCCGGTAAGGGCTTGAGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCGCAGACTTAAGGAAGGTCCAGAGCCGTCTGGTGTGGTTTGAAGGAGAATAGGGAGG
GTGACAACTTGGGGGGCGAGGCTAAGCGCTGGTGGGTGGAGCCCTAACGAAGGAAGCCGA
GCTTGGGGCGGAGCTGGCGCAAAGCGTGGGCGGAACTATCTTTGGGGGTGGAGCCTAAGT
TGTTTGGGGGTTCAGATCCTGCCAGCTGCTGGGTGGTTGTTGGCGCGTCCGGGGGGCCCA
GAATGAGTGAGACAAGATTAGTGGCCTCGGACTCTTATCCATCTCTACAGGCGCTCGCCC
CCTCACCCGCCTCGACCACTCCCCAGATTTGGTGAGACTAACTCTACCCATTATCCTTCT
CCGCGTATTCCCCACCCAATTCCTGAGTCTGAGCCCTTGTTGGTTACCTTCTCTCAATCC
TTCAGCTCTGTCCCCCTCACATAGTTCCACTTGTGGATACTGAGCCCCAGAGGCTAGAAG
AGGAGGAAGACCCCAAGATTGCAGGGGACTTGGACCAGGAGCCGGTAAGGGCTTGAGGAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               416-535, - strand, RNAz p=0.893937

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               416-535, - strand, RNAz p=0.893937

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               31-535, gnl|bosTau2|chr23 (23372283-23372824)
               

               
               31-535, gnl|canFam2|chr12 (4206852-4207314)
               

               
               31-535, gnl|dasNov1|scaffold_186469 (625-161)
               

               
               31-535, gnl|echTel1|scaffold_303864 (81108-81575)
               

               
               31-535, gnl|hg17|chr6 (31800035-31800513)
               

               
               31-535, gnl|Hg17|chr6 (31800078-31800611)
               

               
               31-535, gnl|mm7|chr17 (33162354-33161866)
               

               
               31-535, gnl|Mm7|chr17 (33162305-33161765)
               

               
               31-535, gnl|monDom2|scaffold_42 (17669421-17668973)
               

               
               31-535, gnl|panTro1|chr5 (32200847-32201325)
               

               
               31-535, gnl|rheMac2|chr4 (31369359-31369840)
               

               
               31-535, gnl|rn3|chr20 (3823020-3823499)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-535, gnl|bosTau2|chr23 (23372283-23372824)
               

               
               31-535, gnl|canFam2|chr12 (4206852-4207314)
               

               
               31-535, gnl|dasNov1|scaffold_186469 (625-161)
               

               
               31-535, gnl|echTel1|scaffold_303864 (81108-81575)
               

               
               31-535, gnl|hg17|chr6 (31800035-31800513)
               

               
               31-535, gnl|Hg17|chr6 (31800078-31800611)
               

               
               31-535, gnl|mm7|chr17 (33162354-33161866)
               

               
               31-535, gnl|Mm7|chr17 (33162305-33161765)
               

               
               31-535, gnl|monDom2|scaffold_42 (17669421-17668973)
               

               
               31-535, gnl|panTro1|chr5 (32200847-32201325)
               

               
               31-535, gnl|rheMac2|chr4 (31369359-31369840)
               

               
               31-535, gnl|rn3|chr20 (3823020-3823499)

	31-535, gnl\|bosTau2\|chr23 (23372283-23372824)
	31-535, gnl\|canFam2\|chr12 (4206852-4207314)
	31-535, gnl\|dasNov1\|scaffold_186469 (625-161)
	31-535, gnl\|echTel1\|scaffold_303864 (81108-81575)
	31-535, gnl\|hg17\|chr6 (31800035-31800513)
	31-535, gnl\|Hg17\|chr6 (31800078-31800611)
	31-535, gnl\|mm7\|chr17 (33162354-33161866)
	31-535, gnl\|Mm7\|chr17 (33162305-33161765)
	31-535, gnl\|monDom2\|scaffold_42 (17669421-17668973)
	31-535, gnl\|panTro1\|chr5 (32200847-32201325)
	31-535, gnl\|rheMac2\|chr4 (31369359-31369840)
	31-535, gnl\|rn3\|chr20 (3823020-3823499)