Non-Coding RNA Search

Ss1.1-Pig1-95F12.5

Sequence:


               
               TTCAGTATGTTACAGTCATCCTCTTGGAGAAGTGTTTGCACACACATTTTAATTAGCTGT
CACTAATTAAATCTGGTCATCTTTGTTCTCTTTTTAAAATAAGTTGGGAGTATTCTGTCT
CTGGGTTAAGGATGTAGTTTGGATGTAAAGATATTGTTTGTTAAAATGAGAGCAATTAAG
CCCATTAATCTAGAGCTAATGAATTAGAAAACATGTTTAATTATTTGGATGGGGGAGGGT
TGACCACACCTCCTACTAAGGAGGTGTAAGCCTTATTACAAAGAACACAGGCTGTTAGGT
TCAAACCCCGATCTAAGCATTGCTAGCGTTATGGCCTGGATAGCTCATTTATTTCCTTCT
CAGCTTCGGTTTCTTCATCTGTAAATGGGCGTGATATTGTCCAGCATAGTACTGTCCCAT
ATGGTAGCCACTTACCACAGGTGGCTGCTGAGCACTTGGCATGTGGCTAGTGCAACTGAG
GCACTGAAATTTTAATTTTATTTAATTTTAATTAAGATTTAAATTTAAATTGCCACTTGT
CGCTACTAGCTAGTAGACTCAGCAAATCTGGTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAGTATGTTACAGTCATCCTCTTGGAGAAGTGTTTGCACACACATTTTAATTAGCTGT
CACTAATTAAATCTGGTCATCTTTGTTCTCTTTTTAAAATAAGTTGGGAGTATTCTGTCT
CTGGGTTAAGGATGTAGTTTGGATGTAAAGATATTGTTTGTTAAAATGAGAGCAATTAAG
CCCATTAATCTAGAGCTAATGAATTAGAAAACATGTTTAATTATTTGGATGGGGGAGGGT
TGACCACACCTCCTACTAAGGAGGTGTAAGCCTTATTACAAAGAACACAGGCTGTTAGGT
TCAAACCCCGATCTAAGCATTGCTAGCGTTATGGCCTGGATAGCTCATTTATTTCCTTCT
CAGCTTCGGTTTCTTCATCTGTAAATGGGCGTGATATTGTCCAGCATAGTACTGTCCCAT
ATGGTAGCCACTTACCACAGGTGGCTGCTGAGCACTTGGCATGTGGCTAGTGCAACTGAG
GCACTGAAATTTTAATTTTATTTAATTTTAATTAAGATTTAAATTTAAATTGCCACTTGT
CGCTACTAGCTAGTAGACTCAGCAAATCTGGTACTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               421-530, - strand, RNAz p=0.58282

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               421-530, - strand, RNAz p=0.58282

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               335-564, gnl|bosTau2|chr17 (4535269-4535493)
               

               
               335-564, gnl|Hg17|chr4 (152438708-152438430)
               

               
               335-564, gnl|Mm7|chr3 (86210515-86210758)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               335-564, gnl|bosTau2|chr17 (4535269-4535493)
               

               
               335-564, gnl|Hg17|chr4 (152438708-152438430)
               

               
               335-564, gnl|Mm7|chr3 (86210515-86210758)

	335-564, gnl\|bosTau2\|chr17 (4535269-4535493)
	335-564, gnl\|Hg17\|chr4 (152438708-152438430)
	335-564, gnl\|Mm7\|chr3 (86210515-86210758)