Non-Coding RNA Search

Ss1.1-Pig1-95G11.5

Sequence:


               
               AACTGCGTTTGAGACCGAGGGGGAAAAGATACCATAAATCCGATTGTCCTCAAGTCAGCA
GAGAAGGAGATTGTTCATTTTGGGTCTTATTCTTCTGTGTTTCGAAGATTGATGTGAAAA
TGAAAGCAATGAGATACTTGTGTGTGTGCGCGTGTTTTTCCTGATTTGTTAAATGAAAAA
CCAGCTTCTGAGAAGGCAGGATTTTGAATGCACTACATAAGAGTTTTATTCAGAAACTCT
CTTGGCTGTTATTTCAGAAAAAGAAATGTTTTCTTCCTTGATTTTAATAGAGCAATGAAA
GGCTCAGAGAGAAATTTGTTGCCAGAAATAAGTTTAGGAGTCTCTGATTTGGGAGAGGGC
TGGTGCACTGTGATCTAAAATTCAACGTGTTTGAAAATTATTGAGGGTTTCAAGGCCAGG
GACTTGATGTTTTCCCAGCCAATCTGGTAGCTTGAAAAGGAGAGATCTTTAAAGCTTTGT
CCCCCTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GAAACAATTAAACATCAAGACAAATAATGCCCCTTTCCCCAGCTCTCCGGGATGTGTTCC
CCCTGGTCCTTGCTTTCCCCCTCCCCCAACAATCCCTTGTGCAGCCTCTGATTTCGAAGG
TTCAGGGCAGCTCCGCCTGTGTAAGACAATAGATATGCAAGATAGCAACAGGGCAGTGGC
TCTGAGGCCTTGGCCTTTATCGGGATTAACTGTTACACCAATAAGCAAAACAGGGCGGCA
GGATTTTTCCATCGCTGGCCTTTGCTGTTCCTGGGTGCCAGATGGCATTATATCCATGAA
AAAAAAAAATGCTGCATGTTATAATGTTGACCAGGCACTGTTACTTCCACTTGATCACAC
TGTTTGGGGCTCGCTTTGATGTACAAAACACTCCTAAAATAATGAAATGCGTTGGCAGCT
GGCTAATGGCTGGGAAAGTGCAAACCCTGCCTTGAACTCTTACACCAGCCTATTCAATGG
CAAGGTAACGGCAGGCCGGAGCTAGAGAGGGAGCAGAGAGGCTCGTTGCCAGGCAGGCCC
GGGACTCCTGGGCAAGCGGCTGTAGAGGGGCTGGTATTTTTCTCTCTTCAATAGCAGTGG
CCTGTGCCTGCAGCAAATGTGAAATAAATCCATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTGCGTTTGAGACCGAGGGGGAAAAGATACCATAAATCCGATTGTCCTCAAGTCAGCA
GAGAAGGAGATTGTTCATTTTGGGTCTTATTCTTCTGTGTTTCGAAGATTGATGTGAAAA
TGAAAGCAATGAGATACTTGTGTGTGTGCGCGTGTTTTTCCTGATTTGTTAAATGAAAAA
CCAGCTTCTGAGAAGGCAGGATTTTGAATGCACTACATAAGAGTTTTATTCAGAAACTCT
CTTGGCTGTTATTTCAGAAAAAGAAATGTTTTCTTCCTTGATTTTAATAGAGCAATGAAA
GGCTCAGAGAGAAATTTGTTGCCAGAAATAAGTTTAGGAGTCTCTGATTTGGGAGAGGGC
TGGTGCACTGTGATCTAAAATTCAACGTGTTTGAAAATTATTGAGGGTTTCAAGGCCAGG
GACTTGATGTTTTCCCAGCCAATCTGGTAGCTTGAAAAGGAGAGATCTTTAAAGCTTTGT
CCCCCTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GAAACAATTAAACATCAAGACAAATAATGCCCCTTTCCCCAGCTCTCCGGGATGTGTTCC
CCCTGGTCCTTGCTTTCCCCCTCCCCCAACAATCCCTTGTGCAGCCTCTGATTTCGAAGG
TTCAGGGCAGCTCCGCCTGTGTAAGACAATAGATATGCAAGATAGCAACAGGGCAGTGGC
TCTGAGGCCTTGGCCTTTATCGGGATTAACTGTTACACCAATAAGCAAAACAGGGCGGCA
GGATTTTTCCATCGCTGGCCTTTGCTGTTCCTGGGTGCCAGATGGCATTATATCCATGAA
AAAAAAAAATGCTGCATGTTATAATGTTGACCAGGCACTGTTACTTCCACTTGATCACAC
TGTTTGGGGCTCGCTTTGATGTACAAAACACTCCTAAAATAATGAAATGCGTTGGCAGCT
GGCTAATGGCTGGGAAAGTGCAAACCCTGCCTTGAACTCTTACACCAGCCTATTCAATGG
CAAGGTAACGGCAGGCCGGAGCTAGAGAGGGAGCAGAGAGGCTCGTTGCCAGGCAGGCCC
GGGACTCCTGGGCAAGCGGCTGTAGAGGGGCTGGTATTTTTCTCTCTTCAATAGCAGTGG
CCTGTGCCTGCAGCAAATGTGAAATAAATCCATCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1004-1123, - strand, RNAz p=0.597617

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1004-1123, - strand, RNAz p=0.597617

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1070-1192, + strand, RNAmicro p=0.952136

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1070-1192, + strand, RNAmicro p=0.952136

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               284-389, gnl|bosTau2|chr5 (14006941-14006836)
               

               
               284-389, gnl|Hg17|chr12 (91004742-91004637)
               


               
               400-510, gnl|bosTau2|chr5 (14006771-14006663)
               

               
               400-510, gnl|canFam2|chr15 (35628454-35628569)
               

               
               400-510, gnl|dasNov1|scaffold_44028 (4760-4511)
               

               
               400-510, gnl|echTel1|scaffold_278005 (44272-44089)
               

               
               400-510, gnl|galGal2|chr1 (41185690-41185838)
               

               
               400-510, gnl|hg17|chr12 (91004337-91004526)
               

               
               400-510, gnl|Hg17|chr12 (91004554-91004445)
               

               
               400-510, gnl|loxAfr1|scaffold_39019 (54-286)
               

               
               400-510, gnl|mm7|chr10 (96208707-96208498)
               

               
               400-510, gnl|Mm7|chr10 (96208471-96208603)
               

               
               400-510, gnl|monDom2|scaffold_34 (24370969-24370776)
               

               
               400-510, gnl|panTro1|chr10 (93180555-93180744)
               

               
               400-510, gnl|rheMac2|chr11 (93326762-93326957)
               

               
               400-510, gnl|rn3|chr7 (34082006-34081778)
               


               
               650-1176, gnl|bosTau2|chr5 (14006621-14006091)
               

               
               650-1176, gnl|Hg17|chr12 (91004376-91003813)
               

               
               650-1176, gnl|Mm7|chr10 (96208677-96209211)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               284-389, gnl|bosTau2|chr5 (14006941-14006836)
               

               
               284-389, gnl|Hg17|chr12 (91004742-91004637)
               


               
               400-510, gnl|bosTau2|chr5 (14006771-14006663)
               

               
               400-510, gnl|canFam2|chr15 (35628454-35628569)
               

               
               400-510, gnl|dasNov1|scaffold_44028 (4760-4511)
               

               
               400-510, gnl|echTel1|scaffold_278005 (44272-44089)
               

               
               400-510, gnl|galGal2|chr1 (41185690-41185838)
               

               
               400-510, gnl|hg17|chr12 (91004337-91004526)
               

               
               400-510, gnl|Hg17|chr12 (91004554-91004445)
               

               
               400-510, gnl|loxAfr1|scaffold_39019 (54-286)
               

               
               400-510, gnl|mm7|chr10 (96208707-96208498)
               

               
               400-510, gnl|Mm7|chr10 (96208471-96208603)
               

               
               400-510, gnl|monDom2|scaffold_34 (24370969-24370776)
               

               
               400-510, gnl|panTro1|chr10 (93180555-93180744)
               

               
               400-510, gnl|rheMac2|chr11 (93326762-93326957)
               

               
               400-510, gnl|rn3|chr7 (34082006-34081778)
               


               
               650-1176, gnl|bosTau2|chr5 (14006621-14006091)
               

               
               650-1176, gnl|Hg17|chr12 (91004376-91003813)
               

               
               650-1176, gnl|Mm7|chr10 (96208677-96209211)

	284-389, gnl\|bosTau2\|chr5 (14006941-14006836)
	284-389, gnl\|Hg17\|chr12 (91004742-91004637)

	400-510, gnl\|bosTau2\|chr5 (14006771-14006663)
	400-510, gnl\|canFam2\|chr15 (35628454-35628569)
	400-510, gnl\|dasNov1\|scaffold_44028 (4760-4511)
	400-510, gnl\|echTel1\|scaffold_278005 (44272-44089)
	400-510, gnl\|galGal2\|chr1 (41185690-41185838)
	400-510, gnl\|hg17\|chr12 (91004337-91004526)
	400-510, gnl\|Hg17\|chr12 (91004554-91004445)
	400-510, gnl\|loxAfr1\|scaffold_39019 (54-286)
	400-510, gnl\|mm7\|chr10 (96208707-96208498)
	400-510, gnl\|Mm7\|chr10 (96208471-96208603)
	400-510, gnl\|monDom2\|scaffold_34 (24370969-24370776)
	400-510, gnl\|panTro1\|chr10 (93180555-93180744)
	400-510, gnl\|rheMac2\|chr11 (93326762-93326957)
	400-510, gnl\|rn3\|chr7 (34082006-34081778)

	650-1176, gnl\|bosTau2\|chr5 (14006621-14006091)
	650-1176, gnl\|Hg17\|chr12 (91004376-91003813)
	650-1176, gnl\|Mm7\|chr10 (96208677-96209211)