Non-Coding RNA Search

Ss1.1-Pig1-96D01.5

Sequence:


               
               CTCCAAGTAGAGCCCAGAGACTGAGCCGTCTCCTTCTACTCCATCTGGGTCAGGTGGATG
GACTGCTTTCCAGAACCTAAAAGCCACATGCAGAGACCTGCATGCACCCCAAAGCATTGC
CTAGCAATGGGGGCTCCACCTTGGTGCTCCCTGTGCTGGGCTTTGGGGGGTGGTCCCCCC
ACTTGGTCCACACCCATAGAATCGAGCCCCTGCCCAACTCTCAGGACAGTGGTGTCTCCA
TCCAGGCTAGTCCTCTGTACCCTTGGCCATGAGGGAAGCTGCCCCAGACCACTGAGGGGC
TTCCTTGCCCCTCCTGGGCACTCACCTGGGACCCAACTGAAGGCTGGAGAGTCCAGCAGC
TGAAGAGGAAGGGGTGAGGAGCTCATCCAGGAGTGGGGAAGACATGGGCTGTGCCTGTTC
CAATTGCCCTCCCCTCCCATGGGGTATGTTGTGAAGTTCTGGGGGCTCTGGGTCTGGGTT
GCCCCCATTAAAGATATGCTCTCCCTGCCTTCTCTTCTCTGAGGGCAGTGAGTTCCTGTC
CCCCTTGAGTGAAAGTGGAAGATCCTGTGGGCCCAGAGTGGATCTCACCTTGTGGATGGC
TGGGCCATGAGTGGCCACTGCTTGGTCGGGTGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCAAGTAGAGCCCAGAGACTGAGCCGTCTCCTTCTACTCCATCTGGGTCAGGTGGATG
GACTGCTTTCCAGAACCTAAAAGCCACATGCAGAGACCTGCATGCACCCCAAAGCATTGC
CTAGCAATGGGGGCTCCACCTTGGTGCTCCCTGTGCTGGGCTTTGGGGGGTGGTCCCCCC
ACTTGGTCCACACCCATAGAATCGAGCCCCTGCCCAACTCTCAGGACAGTGGTGTCTCCA
TCCAGGCTAGTCCTCTGTACCCTTGGCCATGAGGGAAGCTGCCCCAGACCACTGAGGGGC
TTCCTTGCCCCTCCTGGGCACTCACCTGGGACCCAACTGAAGGCTGGAGAGTCCAGCAGC
TGAAGAGGAAGGGGTGAGGAGCTCATCCAGGAGTGGGGAAGACATGGGCTGTGCCTGTTC
CAATTGCCCTCCCCTCCCATGGGGTATGTTGTGAAGTTCTGGGGGCTCTGGGTCTGGGTT
GCCCCCATTAAAGATATGCTCTCCCTGCCTTCTCTTCTCTGAGGGCAGTGAGTTCCTGTC
CCCCTTGAGTGAAAGTGGAAGATCCTGTGGGCCCAGAGTGGATCTCACCTTGTGGATGGC
TGGGCCATGAGTGGCCACTGCTTGGTCGGGTGATGA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               41-158, - strand, RNAz p=0.681792
               

               
               116-355, - strand, RNAz p=0.993806
               

               
               239-357, - strand, RNAz p=0.786143
               

               
               519-611, - strand, RNAz p=0.56097

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-158, - strand, RNAz p=0.681792
               

               
               116-355, - strand, RNAz p=0.993806
               

               
               239-357, - strand, RNAz p=0.786143
               

               
               519-611, - strand, RNAz p=0.56097

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               134-219, + strand, RNAmicro p=0.952781

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               134-219, + strand, RNAmicro p=0.952781

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-629, gnl|bosTau2|chr13 (33753839-33753201)
               

               
               1-629, gnl|canFam2|chr24 (20576206-20575710)
               

               
               1-629, gnl|echTel1|scaffold_307058 (8459-8905)
               

               
               1-629, gnl|hg17|chr20 (3705927-3706442)
               

               
               1-629, gnl|Hg17|chr20 (3706675-3705990)
               

               
               1-629, gnl|mm7|chr2 (130911713-130912166)
               

               
               1-629, gnl|Mm7|chr2 (130912368-130911752)
               

               
               1-629, gnl|oryCun1|scaffold_134149 (2417-1970)
               

               
               1-629, gnl|panTro1|chr21 (3683312-3683827)
               

               
               1-629, gnl|rn3|chr3 (118782714-118783193)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-629, gnl|bosTau2|chr13 (33753839-33753201)
               

               
               1-629, gnl|canFam2|chr24 (20576206-20575710)
               

               
               1-629, gnl|echTel1|scaffold_307058 (8459-8905)
               

               
               1-629, gnl|hg17|chr20 (3705927-3706442)
               

               
               1-629, gnl|Hg17|chr20 (3706675-3705990)
               

               
               1-629, gnl|mm7|chr2 (130911713-130912166)
               

               
               1-629, gnl|Mm7|chr2 (130912368-130911752)
               

               
               1-629, gnl|oryCun1|scaffold_134149 (2417-1970)
               

               
               1-629, gnl|panTro1|chr21 (3683312-3683827)
               

               
               1-629, gnl|rn3|chr3 (118782714-118783193)

	41-158, - strand, RNAz p=0.681792
	116-355, - strand, RNAz p=0.993806
	239-357, - strand, RNAz p=0.786143
	519-611, - strand, RNAz p=0.56097

	1-629, gnl\|bosTau2\|chr13 (33753839-33753201)
	1-629, gnl\|canFam2\|chr24 (20576206-20575710)
	1-629, gnl\|echTel1\|scaffold_307058 (8459-8905)
	1-629, gnl\|hg17\|chr20 (3705927-3706442)
	1-629, gnl\|Hg17\|chr20 (3706675-3705990)
	1-629, gnl\|mm7\|chr2 (130911713-130912166)
	1-629, gnl\|Mm7\|chr2 (130912368-130911752)
	1-629, gnl\|oryCun1\|scaffold_134149 (2417-1970)
	1-629, gnl\|panTro1\|chr21 (3683312-3683827)
	1-629, gnl\|rn3\|chr3 (118782714-118783193)