Non-Coding RNA Search

Ss1.1-Pig1-97J06.5

Sequence:


               
               TTTGGGTTTAGCCTGTTGGCCTGTTCAAACTATCACTGGCAGCTGAGCTTCTTGCGGGCC
GAGCATGTGCTGCTGGATCAGCTGGATGATGACGGTGGCTGCCGCATGAAGTGCTTTCAA
GCCCTGAGGCATATGAAGGACGATGTCTGGTGCCCGGGGAAGAGGCCTGTGATCACCTCC
CACTCACCTGCAGTGACGCTCCCAGCATGGTTTCACGCTGCCCCTGGAAGCAGTGAGAAA
GAAGCATCAAACATCCAGCCCGTGCTCCTCGGGAATGTTCACAACTCAGCAAGCAATGAC
CAGGTACCAAGCATGCTGCCAGGCACCAGTGATACCGTGATGGATAAGGCATCGTTGTCG
ATCTGTGTGGGAGACAATCCATGCGCCTTCCTCGCAGGTGAGAAAACTGAGGCCCAGAGA
AGGTTAAGGAACTTGCCTGGGGACACACAGTCTGTGATAGAGGACAGATTTGAGCCCAGG
CTGTCTGACTCCATTGTTGGTGCTTTTAGCCCTGCGCTATTCAGCCTCCGGTTCTGGTGC
TCTTTCTGTGCGGATCTTCATAGAGAATAAGCCACCACGTGATACGTGGCATCCAGGCCA
GTGGACACTCTGAAGCCGAGAAGCATGTGGATCAGCGCCGACCACCATCCATGTGAGAAG
AGGAGCCCCCGGGGAGGCTTGAGCCCATCCAGGTGGACAAAGCTCTCCTTTCTCCCAGGG
ATGTTTCCTGGTTGTTGCCAGAGCTTCTCAGGTAACCCCAGTTTGAGTGTCTGAAATCCC
TGTGGGAAGCCCAGCACCTCCAGAGCAATACCTGGGATTCTCAGAGCGTCCTAGAACCAG
CCTTGGTTTGAGCAGCCGAGCTTTCAGACATCCAGTTACTGGACACCCGGCCTCTGGGGC
CAGCGGTGGGCCACCGGACCTCTCCCCAGAACACCTAGTGGACACATCTTGGAGCCTGTC
ATGGGGTACCTGTGGGCCTGGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGGTTTAGCCTGTTGGCCTGTTCAAACTATCACTGGCAGCTGAGCTTCTTGCGGGCC
GAGCATGTGCTGCTGGATCAGCTGGATGATGACGGTGGCTGCCGCATGAAGTGCTTTCAA
GCCCTGAGGCATATGAAGGACGATGTCTGGTGCCCGGGGAAGAGGCCTGTGATCACCTCC
CACTCACCTGCAGTGACGCTCCCAGCATGGTTTCACGCTGCCCCTGGAAGCAGTGAGAAA
GAAGCATCAAACATCCAGCCCGTGCTCCTCGGGAATGTTCACAACTCAGCAAGCAATGAC
CAGGTACCAAGCATGCTGCCAGGCACCAGTGATACCGTGATGGATAAGGCATCGTTGTCG
ATCTGTGTGGGAGACAATCCATGCGCCTTCCTCGCAGGTGAGAAAACTGAGGCCCAGAGA
AGGTTAAGGAACTTGCCTGGGGACACACAGTCTGTGATAGAGGACAGATTTGAGCCCAGG
CTGTCTGACTCCATTGTTGGTGCTTTTAGCCCTGCGCTATTCAGCCTCCGGTTCTGGTGC
TCTTTCTGTGCGGATCTTCATAGAGAATAAGCCACCACGTGATACGTGGCATCCAGGCCA
GTGGACACTCTGAAGCCGAGAAGCATGTGGATCAGCGCCGACCACCATCCATGTGAGAAG
AGGAGCCCCCGGGGAGGCTTGAGCCCATCCAGGTGGACAAAGCTCTCCTTTCTCCCAGGG
ATGTTTCCTGGTTGTTGCCAGAGCTTCTCAGGTAACCCCAGTTTGAGTGTCTGAAATCCC
TGTGGGAAGCCCAGCACCTCCAGAGCAATACCTGGGATTCTCAGAGCGTCCTAGAACCAG
CCTTGGTTTGAGCAGCCGAGCTTTCAGACATCCAGTTACTGGACACCCGGCCTCTGGGGC
CAGCGGTGGGCCACCGGACCTCTCCCCAGAACACCTAGTGGACACATCTTGGAGCCTGTC
ATGGGGTACCTGTGGGCCTGGATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               687-907, - strand, RNAz p=0.997079

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               687-907, - strand, RNAz p=0.997079

Aligned organism(s): 22 entry(ies)

More info

Aligned organism(s): 22 entry(ies)

Help | Less info


               
               1-193, gnl|bosTau2|chr3 (23042015-23042206)
               

               
               1-193, gnl|Hg17|chr1 (116382811-116383002)
               

               
               1-193, gnl|Mm7|chr3 (101613570-101613379)
               


               
               266-400, gnl|bosTau2|chr3 (23070833-23070967)
               

               
               266-400, gnl|canFam2|chr17 (56699974-56700267)
               

               
               266-400, gnl|dasNov1|scaffold_145839 (4168-3844)
               

               
               266-400, gnl|hg17|chr1 (116417420-116417768)
               

               
               266-400, gnl|Hg17|chr1 (116417524-116417675)
               

               
               266-400, gnl|panTro1|chr1 (116225645-116226010)
               

               
               266-400, gnl|rheMac2|chr1 (119138159-119138529)
               


               
               418-548, gnl|bosTau2|chr3 (23075883-23076017)
               

               
               418-548, gnl|canFam2|chr17 (56701925-56702171)
               

               
               418-548, gnl|hg17|chr1 (116419813-116420033)
               

               
               418-548, gnl|Hg17|chr1 (116419911-116420039)
               

               
               418-548, gnl|loxAfr1|scaffold_26422 (12267-11962)
               

               
               418-548, gnl|mm7|chr3 (101594229-101594024)
               

               
               418-548, gnl|oryCun1|scaffold_211430 (132618-132413)
               

               
               418-548, gnl|panTro1|chr1 (116227840-116228060)
               

               
               418-548, gnl|rheMac2|chr1 (119140315-119140535)
               

               
               418-548, gnl|rn3|chr2 (196852622-196852416)
               


               
               648-907, gnl|bosTau2|chr3 (23076264-23076510)
               

               
               648-907, gnl|Hg17|chr1 (116420144-116420390)

Aligned organism(s): 22 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-193, gnl|bosTau2|chr3 (23042015-23042206)
               

               
               1-193, gnl|Hg17|chr1 (116382811-116383002)
               

               
               1-193, gnl|Mm7|chr3 (101613570-101613379)
               


               
               266-400, gnl|bosTau2|chr3 (23070833-23070967)
               

               
               266-400, gnl|canFam2|chr17 (56699974-56700267)
               

               
               266-400, gnl|dasNov1|scaffold_145839 (4168-3844)
               

               
               266-400, gnl|hg17|chr1 (116417420-116417768)
               

               
               266-400, gnl|Hg17|chr1 (116417524-116417675)
               

               
               266-400, gnl|panTro1|chr1 (116225645-116226010)
               

               
               266-400, gnl|rheMac2|chr1 (119138159-119138529)
               


               
               418-548, gnl|bosTau2|chr3 (23075883-23076017)
               

               
               418-548, gnl|canFam2|chr17 (56701925-56702171)
               

               
               418-548, gnl|hg17|chr1 (116419813-116420033)
               

               
               418-548, gnl|Hg17|chr1 (116419911-116420039)
               

               
               418-548, gnl|loxAfr1|scaffold_26422 (12267-11962)
               

               
               418-548, gnl|mm7|chr3 (101594229-101594024)
               

               
               418-548, gnl|oryCun1|scaffold_211430 (132618-132413)
               

               
               418-548, gnl|panTro1|chr1 (116227840-116228060)
               

               
               418-548, gnl|rheMac2|chr1 (119140315-119140535)
               

               
               418-548, gnl|rn3|chr2 (196852622-196852416)
               


               
               648-907, gnl|bosTau2|chr3 (23076264-23076510)
               

               
               648-907, gnl|Hg17|chr1 (116420144-116420390)

	1-193, gnl\|bosTau2\|chr3 (23042015-23042206)
	1-193, gnl\|Hg17\|chr1 (116382811-116383002)
	1-193, gnl\|Mm7\|chr3 (101613570-101613379)

	266-400, gnl\|bosTau2\|chr3 (23070833-23070967)
	266-400, gnl\|canFam2\|chr17 (56699974-56700267)
	266-400, gnl\|dasNov1\|scaffold_145839 (4168-3844)
	266-400, gnl\|hg17\|chr1 (116417420-116417768)
	266-400, gnl\|Hg17\|chr1 (116417524-116417675)
	266-400, gnl\|panTro1\|chr1 (116225645-116226010)
	266-400, gnl\|rheMac2\|chr1 (119138159-119138529)

	418-548, gnl\|bosTau2\|chr3 (23075883-23076017)
	418-548, gnl\|canFam2\|chr17 (56701925-56702171)
	418-548, gnl\|hg17\|chr1 (116419813-116420033)
	418-548, gnl\|Hg17\|chr1 (116419911-116420039)
	418-548, gnl\|loxAfr1\|scaffold_26422 (12267-11962)
	418-548, gnl\|mm7\|chr3 (101594229-101594024)
	418-548, gnl\|oryCun1\|scaffold_211430 (132618-132413)
	418-548, gnl\|panTro1\|chr1 (116227840-116228060)
	418-548, gnl\|rheMac2\|chr1 (119140315-119140535)
	418-548, gnl\|rn3\|chr2 (196852622-196852416)

	648-907, gnl\|bosTau2\|chr3 (23076264-23076510)
	648-907, gnl\|Hg17\|chr1 (116420144-116420390)