Non-Coding RNA Search

Ss1.1-Pig1-98O07.5

Sequence:


               
               GGAAAACAAGCTGGTGGCCGAGGGAAACCTCTACTCAGACAAGATCAAGGAGAAGGTGCA
GCAGATAGAGGACAGGCACAAGAGGAACAACGAGAAGGCCCAGGAAGCCTCAGTTCTTCT
GCAAGACAACCTGGCGCTCCAGAACTTCCTGCAGAACTGCCAGGAGCTCACTCTCTGGAT
CAATGACAAGCTGCTGACATCTCAGGATGTCTCCTATGATGATGCGCGAAACCTTCACAA
CAAGTGGCTGAAGCACACGGCGTTCGAGGCGGAGCTGGCTTCTCAACAGGGCTGGCTAGA
GAACATTGATGCGGAAGGAAAGCAGCTGATGGAGGAGAAGCCCCAGTTTGAGGCCCTGGT
GTCCCAGAGGCTGGAAGCTTTGCACCGACTCTGGGATGAGCTCCAGGCCACCACCAAGGA
GATAGGCCAGCGCCTCTCAGCTGCCAGGAGCTCCGACCTGCGCTCGCAGACCCACGCCGA
CCTCAACAAATGGATCAGGGCCATGGAGGACCAGCTGCGGTCAGACGACCTGGGCAAGGA
CCTGACCAGCGTCAACAGGATGCTGGCTAAGCTGAAGCGCGTGGAGGACCAAGTGAATGT
GCGGAAGGAGGAGTTGGGGGAGCTGTTTGCCCACATGCCCTCGCCGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAACAAGCTGGTGGCCGAGGGAAACCTCTACTCAGACAAGATCAAGGAGAAGGTGCA
GCAGATAGAGGACAGGCACAAGAGGAACAACGAGAAGGCCCAGGAAGCCTCAGTTCTTCT
GCAAGACAACCTGGCGCTCCAGAACTTCCTGCAGAACTGCCAGGAGCTCACTCTCTGGAT
CAATGACAAGCTGCTGACATCTCAGGATGTCTCCTATGATGATGCGCGAAACCTTCACAA
CAAGTGGCTGAAGCACACGGCGTTCGAGGCGGAGCTGGCTTCTCAACAGGGCTGGCTAGA
GAACATTGATGCGGAAGGAAAGCAGCTGATGGAGGAGAAGCCCCAGTTTGAGGCCCTGGT
GTCCCAGAGGCTGGAAGCTTTGCACCGACTCTGGGATGAGCTCCAGGCCACCACCAAGGA
GATAGGCCAGCGCCTCTCAGCTGCCAGGAGCTCCGACCTGCGCTCGCAGACCCACGCCGA
CCTCAACAAATGGATCAGGGCCATGGAGGACCAGCTGCGGTCAGACGACCTGGGCAAGGA
CCTGACCAGCGTCAACAGGATGCTGGCTAAGCTGAAGCGCGTGGAGGACCAAGTGAATGT
GCGGAAGGAGGAGTTGGGGGAGCTGTTTGCCCACATGCCCTCGCCGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|338334|gb|AAA60572.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|338334|gb|AAA60572.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               74-175, - strand, RNAz p=0.783244

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-175, - strand, RNAz p=0.783244

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               74-175, gnl|bosTau2|chr10 (52231905-52231804)
               

               
               74-175, gnl|Hg17|chr14 (64322100-64321999)
               

               
               74-175, gnl|Mm7|chr12 (74570590-74570489)
               


               
               313-583, gnl|bosTau2|chr10 (52229622-52229351)
               

               
               313-583, gnl|Hg17|chr14 (64319025-64318754)
               

               
               313-583, gnl|Mm7|chr12 (74567990-74567719)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-175, gnl|bosTau2|chr10 (52231905-52231804)
               

               
               74-175, gnl|Hg17|chr14 (64322100-64321999)
               

               
               74-175, gnl|Mm7|chr12 (74570590-74570489)
               


               
               313-583, gnl|bosTau2|chr10 (52229622-52229351)
               

               
               313-583, gnl|Hg17|chr14 (64319025-64318754)
               

               
               313-583, gnl|Mm7|chr12 (74567990-74567719)

	74-175, gnl\|bosTau2\|chr10 (52231905-52231804)
	74-175, gnl\|Hg17\|chr14 (64322100-64321999)
	74-175, gnl\|Mm7\|chr12 (74570590-74570489)

	313-583, gnl\|bosTau2\|chr10 (52229622-52229351)
	313-583, gnl\|Hg17\|chr14 (64319025-64318754)
	313-583, gnl\|Mm7\|chr12 (74567990-74567719)