Ss1.1-Pig1-99D07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTTGAAGAGACTCAGGCTACCTTCCTTCAGACTGATTTGCTGAAGCTGCTGGTGAAAA AGTGCAGCAAAGGGACAGGCTTCAGTAAAACGTGGCTCCTCCGGGACCTGGAGGTTTTGT CCATCATGCTGTACTCCTCAAAAAAGGAGATCAACACTCTGGCCGAGCACGGGGAGCTGG AGCCGGATGAGCGCGGGGACCAGGAGGAGGATGTGGAACGGTCGGTCAGCAGCCCTGGGG AGCCAGAGCAGAAGAAGCTGGACCCTCTTGAAAGCCTGGATGAGCCCACCAGAATCTGTT TCTTGATGGCTCACGACGCCCTCAATGCCCCTCTGCACATTCTCCGGGCCATCTATGAGC TGCAGATGAAGAGGACCGACTCCTTCTTCCTGGAGGTTCAGAAGAGGTTTGACGGAGACG AGCTCACCACGGATGAAAGGATTCGGACCCTGGCTCAGAGGTGGCAGCCCAGCAGGAGTC TGAGGCTGGACGAGCAGAGCGCCAAAGCCGTGGACACAGACATGATTATCTTACCGTGCC TGTCCCGGCCCGCACGCTGTGAGCAGGCCACTGCCGAGTCCAACCCCGTGACCCAGAAGC TGATCTCCAGCACCGAGAGTGAACTGCAGCAGAGCTACGCCAAGCAGCCACAAGAGGGTT TGGTTAGGTTTTCGAAAAATATGCTAAAACATAGTAATGGATAACCTGGTGAGCATTTGA ACTCTCATTCTTTAGGAAATGTTTTTAAATTAAAATTTTTTTATATTCAAAATTTGCATT TCTTTATATTCAGAGAATTTGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTTGAAGAGACTCAGGCTACCTTCCTTCAGACTGATTTGCTGAAGCTGCTGGTGAAAA AGTGCAGCAAAGGGACAGGCTTCAGTAAAACGTGGCTCCTCCGGGACCTGGAGGTTTTGT CCATCATGCTGTACTCCTCAAAAAAGGAGATCAACACTCTGGCCGAGCACGGGGAGCTGG AGCCGGATGAGCGCGGGGACCAGGAGGAGGATGTGGAACGGTCGGTCAGCAGCCCTGGGG AGCCAGAGCAGAAGAAGCTGGACCCTCTTGAAAGCCTGGATGAGCCCACCAGAATCTGTT TCTTGATGGCTCACGACGCCCTCAATGCCCCTCTGCACATTCTCCGGGCCATCTATGAGC TGCAGATGAAGAGGACCGACTCCTTCTTCCTGGAGGTTCAGAAGAGGTTTGACGGAGACG AGCTCACCACGGATGAAAGGATTCGGACCCTGGCTCAGAGGTGGCAGCCCAGCAGGAGTC TGAGGCTGGACGAGCAGAGCGCCAAAGCCGTGGACACAGACATGATTATCTTACCGTGCC TGTCCCGGCCCGCACGCTGTGAGCAGGCCACTGCCGAGTCCAACCCCGTGACCCAGAAGC TGATCTCCAGCACCGAGAGTGAACTGCAGCAGAGCTACGCCAAGCAGCCACAAGAGGGTT TGGTTAGGTTTTCGAAAAATATGCTAAAACATAGTAATGGATAACCTGGTGAGCATTTGA ACTCTCATTCTTTAGGAAATGTTTTTAAATTAAAATTTTTTTATATTCAAAATTTGCATT TCTTTATATTCAGAGAATTTGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 181-292, - strand, RNAz p=0.710618 | |
| 654-771, - strand, RNAz p=0.66526 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 181-292, - strand, RNAz p=0.710618 | |
| 654-771, - strand, RNAz p=0.66526 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AB007859, - |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 112-305, gnl|bosTau2|chr19 (19200573-19200380) | |
| 112-305, gnl|canFam2|chr5 (33141961-33142166) | |
| 112-305, gnl|danRer3|chr5 (26010254-26010454) | |
| 112-305, gnl|fr1|chrUn (54209988-54209796) | |
| 112-305, gnl|galGal2|chr19 (3006576-3006371) | |
| 112-305, gnl|hg17|chr17 (3871171-3871379) | |
| 112-305, gnl|Hg17|chr17 (3871365-3871172) | |
| 112-305, gnl|loxAfr1|scaffold_47516 (2307-2515) | |
| 112-305, gnl|mm7|chr11 (72991898-72991683) | |
| 112-305, gnl|Mm7|chr11 (72991702-72991895) | |
| 112-305, gnl|monDom2|scaffold_310 (127547-127367) | |
| 112-305, gnl|oryCun1|scaffold_146514 (649-440) | |
| 112-305, gnl|panTro1|chr19 (4174743-4174951) | |
| 112-305, gnl|rheMac2|chr16 (3746718-3746926) | |
| 112-305, gnl|rn3|chr10 (59819146-59818937) | |
| 112-305, gnl|tetNig1|chr7 (2039145-2039333) | |
| 112-305, gnl|xenTro1|scaffold_21 (2230718-2230908) | |
| 405-542, gnl|bosTau2|chr19 (19197993-19197856) | |
| 405-542, gnl|canFam2|chr5 (33139339-33139486) | |
| 405-542, gnl|danRer3|chr5 (26008271-26008442) | |
| 405-542, gnl|dasNov1|scaffold_4023 (92818-92651) | |
| 405-542, gnl|echTel1|scaffold_310342 (73859-74030) | |
| 405-542, gnl|fr1|chrUn (54210473-54210329) | |
| 405-542, gnl|galGal2|chr19 (3007675-3007502) | |
| 405-542, gnl|hg17|chr17 (3867874-3868046) | |
| 405-542, gnl|Hg17|chr17 (3868016-3867879) | |
| 405-542, gnl|mm7|chr11 (72994539-72994371) | |
| 405-542, gnl|Mm7|chr11 (72994395-72994532) | |
| 405-542, gnl|monDom2|scaffold_310 (128367-128212) | |
| 405-542, gnl|panTro1|chr19 (4171445-4171617) | |
| 405-542, gnl|rheMac2|chr16 (3743106-3743278) | |
| 405-542, gnl|rn3|chr10 (59821716-59821547) | |
| 405-542, gnl|tetNig1|chr7 (2038655-2038803) | |
| 405-542, gnl|xenTro1|scaffold_21 (2229874-2230041) | |
| 649-771, gnl|bosTau2|chr19 (19201703-19201581) | |
| 649-771, gnl|canFam2|chr5 (33142797-33142972) | |
| 649-771, gnl|dasNov1|scaffold_162910 (1636-1450) | |
| 649-771, gnl|hg17|chr17 (3872032-3872225) | |
| 649-771, gnl|Hg17|chr17 (3872134-3872030) | |
| 649-771, gnl|loxAfr1|scaffold_47516 (3172-3365) | |
| 649-771, gnl|mm7|chr11 (72990692-72990535) | |
| 649-771, gnl|panTro1|chr19 (4175604-4175797) | |
| 649-771, gnl|rheMac2|chr16 (3747577-3747770) | |
| 649-771, gnl|rn3|chr10 (59818184-59818030) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 112-305, gnl|bosTau2|chr19 (19200573-19200380) | |
| 112-305, gnl|canFam2|chr5 (33141961-33142166) | |
| 112-305, gnl|danRer3|chr5 (26010254-26010454) | |
| 112-305, gnl|fr1|chrUn (54209988-54209796) | |
| 112-305, gnl|galGal2|chr19 (3006576-3006371) | |
| 112-305, gnl|hg17|chr17 (3871171-3871379) | |
| 112-305, gnl|Hg17|chr17 (3871365-3871172) | |
| 112-305, gnl|loxAfr1|scaffold_47516 (2307-2515) | |
| 112-305, gnl|mm7|chr11 (72991898-72991683) | |
| 112-305, gnl|Mm7|chr11 (72991702-72991895) | |
| 112-305, gnl|monDom2|scaffold_310 (127547-127367) | |
| 112-305, gnl|oryCun1|scaffold_146514 (649-440) | |
| 112-305, gnl|panTro1|chr19 (4174743-4174951) | |
| 112-305, gnl|rheMac2|chr16 (3746718-3746926) | |
| 112-305, gnl|rn3|chr10 (59819146-59818937) | |
| 112-305, gnl|tetNig1|chr7 (2039145-2039333) | |
| 112-305, gnl|xenTro1|scaffold_21 (2230718-2230908) | |
| 405-542, gnl|bosTau2|chr19 (19197993-19197856) | |
| 405-542, gnl|canFam2|chr5 (33139339-33139486) | |
| 405-542, gnl|danRer3|chr5 (26008271-26008442) | |
| 405-542, gnl|dasNov1|scaffold_4023 (92818-92651) | |
| 405-542, gnl|echTel1|scaffold_310342 (73859-74030) | |
| 405-542, gnl|fr1|chrUn (54210473-54210329) | |
| 405-542, gnl|galGal2|chr19 (3007675-3007502) | |
| 405-542, gnl|hg17|chr17 (3867874-3868046) | |
| 405-542, gnl|Hg17|chr17 (3868016-3867879) | |
| 405-542, gnl|mm7|chr11 (72994539-72994371) | |
| 405-542, gnl|Mm7|chr11 (72994395-72994532) | |
| 405-542, gnl|monDom2|scaffold_310 (128367-128212) | |
| 405-542, gnl|panTro1|chr19 (4171445-4171617) | |
| 405-542, gnl|rheMac2|chr16 (3743106-3743278) | |
| 405-542, gnl|rn3|chr10 (59821716-59821547) | |
| 405-542, gnl|tetNig1|chr7 (2038655-2038803) | |
| 405-542, gnl|xenTro1|scaffold_21 (2229874-2230041) | |
| 649-771, gnl|bosTau2|chr19 (19201703-19201581) | |
| 649-771, gnl|canFam2|chr5 (33142797-33142972) | |
| 649-771, gnl|dasNov1|scaffold_162910 (1636-1450) | |
| 649-771, gnl|hg17|chr17 (3872032-3872225) | |
| 649-771, gnl|Hg17|chr17 (3872134-3872030) | |
| 649-771, gnl|loxAfr1|scaffold_47516 (3172-3365) | |
| 649-771, gnl|mm7|chr11 (72990692-72990535) | |
| 649-771, gnl|panTro1|chr19 (4175604-4175797) | |
| 649-771, gnl|rheMac2|chr16 (3747577-3747770) | |
| 649-771, gnl|rn3|chr10 (59818184-59818030) |