Non-Coding RNA Search

Ss1.1-Pig1-99F03.5

Sequence:


               
               CTCGGCCAGCAGGATGCGGGCCAGCTCTCAGAGAGCCCAGCTTTGGGCCCTGTTGGCCAG
GCATTGTCCCAAGTTTGAGGGAAGCCTTATAGAAATTGCCAGGCCTTGCGAATGGCCCTG
GACTTCTAGAAATAAGAGTGGCGATATCATGTGGCAAGTAAGTCCCAAAACTGGGACTAT
CCTCAGGCTAGAGCCACAGGCCCGCCTTCCGACTGGTGCAGGAAGCGTTAACATGCCGAC
CCTGCGTGATCTGTTGGGACGTGAGCGGGCTGCTGCGATGCCTGACGCTGCCGAGCACAC
TTCTCCCGTGTATCCCTGCTTTGTTTCTAGAAATGGCCCAGCTGAGCAGTTATGACAGTC
CTGACACTCCGGAGACAGATGATTCGGTCGAGGGCCGTGGGGCATCTCTGACACCTCAGA
AGACACCCTCTGAAGAGGACTTTGAAACCATCAAGCTCATCAGCAACGGCGCCTACGGGT
AAAGGCAGGGGTCAGGGTGCGGCTGCCTCTGGAGCCGAGTCAGCGCTCGGGTTCCTCCCT
CTAGGCGGGTGATGCCTGGTCCTCCGGGCAGCAGGTGCCTCAGGATGGACCCTCTCCTCC
ACCCTGGGGCCTTCTGCAGAGGCAGGGGTCCAATTTCCGGCGGCATCTGAGCCGGCTGCC
TTTCCCTGGCAAGATCCCCTCTGCTTGGGGGCGCCCTCCCCTCGCTGCGCTCTGAGTGGG
GCTCAGTGTCCTTGGGCCTCGGTCCATCGGGAGATCGAAGTGCTCTCTGGGCTGCGGGCT
CAGCTCCCCCTCCGATGAGCACCCCCTCTGCCTTTGCTCTCTGCGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGCCAGCAGGATGCGGGCCAGCTCTCAGAGAGCCCAGCTTTGGGCCCTGTTGGCCAG
GCATTGTCCCAAGTTTGAGGGAAGCCTTATAGAAATTGCCAGGCCTTGCGAATGGCCCTG
GACTTCTAGAAATAAGAGTGGCGATATCATGTGGCAAGTAAGTCCCAAAACTGGGACTAT
CCTCAGGCTAGAGCCACAGGCCCGCCTTCCGACTGGTGCAGGAAGCGTTAACATGCCGAC
CCTGCGTGATCTGTTGGGACGTGAGCGGGCTGCTGCGATGCCTGACGCTGCCGAGCACAC
TTCTCCCGTGTATCCCTGCTTTGTTTCTAGAAATGGCCCAGCTGAGCAGTTATGACAGTC
CTGACACTCCGGAGACAGATGATTCGGTCGAGGGCCGTGGGGCATCTCTGACACCTCAGA
AGACACCCTCTGAAGAGGACTTTGAAACCATCAAGCTCATCAGCAACGGCGCCTACGGGT
AAAGGCAGGGGTCAGGGTGCGGCTGCCTCTGGAGCCGAGTCAGCGCTCGGGTTCCTCCCT
CTAGGCGGGTGATGCCTGGTCCTCCGGGCAGCAGGTGCCTCAGGATGGACCCTCTCCTCC
ACCCTGGGGCCTTCTGCAGAGGCAGGGGTCCAATTTCCGGCGGCATCTGAGCCGGCTGCC
TTTCCCTGGCAAGATCCCCTCTGCTTGGGGGCGCCCTCCCCTCGCTGCGCTCTGAGTGGG
GCTCAGTGTCCTTGGGCCTCGGTCCATCGGGAGATCGAAGTGCTCTCTGGGCTGCGGGCT
CAGCTCCCCCTCCGATGAGCACCCCCTCTGCCTTTGCTCTCTGCGTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               52-208, - strand, RNAz p=0.987586

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               52-208, - strand, RNAz p=0.987586

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               37-393, gnl|bosTau2|chr3 (70180917-70180565)
               

               
               37-393, gnl|canFam2|chr15 (17378979-17378392)
               

               
               37-393, gnl|dasNov1|scaffold_59918 (4600-4001)
               

               
               37-393, gnl|echTel1|scaffold_254867 (3104-2614)
               

               
               37-393, gnl|hg17|chr1 (46199920-46200539)
               

               
               37-393, gnl|Hg17|chr1 (46200312-46200664)
               

               
               37-393, gnl|loxAfr1|scaffold_30782 (9668-10294)
               

               
               37-393, gnl|mm7|chr4 (115694055-115693544)
               

               
               37-393, gnl|Mm7|chr4 (115693760-115693415)
               

               
               37-393, gnl|oryCun1|scaffold_87054 (2684-3269)
               

               
               37-393, gnl|panTro1|chr1_random (67393235-67392616)
               

               
               37-393, gnl|rheMac2|chr1 (48954071-48954674)
               

               
               37-393, gnl|rn3|chr5 (136589883-136589307)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-393, gnl|bosTau2|chr3 (70180917-70180565)
               

               
               37-393, gnl|canFam2|chr15 (17378979-17378392)
               

               
               37-393, gnl|dasNov1|scaffold_59918 (4600-4001)
               

               
               37-393, gnl|echTel1|scaffold_254867 (3104-2614)
               

               
               37-393, gnl|hg17|chr1 (46199920-46200539)
               

               
               37-393, gnl|Hg17|chr1 (46200312-46200664)
               

               
               37-393, gnl|loxAfr1|scaffold_30782 (9668-10294)
               

               
               37-393, gnl|mm7|chr4 (115694055-115693544)
               

               
               37-393, gnl|Mm7|chr4 (115693760-115693415)
               

               
               37-393, gnl|oryCun1|scaffold_87054 (2684-3269)
               

               
               37-393, gnl|panTro1|chr1_random (67393235-67392616)
               

               
               37-393, gnl|rheMac2|chr1 (48954071-48954674)
               

               
               37-393, gnl|rn3|chr5 (136589883-136589307)

	37-393, gnl\|bosTau2\|chr3 (70180917-70180565)
	37-393, gnl\|canFam2\|chr15 (17378979-17378392)
	37-393, gnl\|dasNov1\|scaffold_59918 (4600-4001)
	37-393, gnl\|echTel1\|scaffold_254867 (3104-2614)
	37-393, gnl\|hg17\|chr1 (46199920-46200539)
	37-393, gnl\|Hg17\|chr1 (46200312-46200664)
	37-393, gnl\|loxAfr1\|scaffold_30782 (9668-10294)
	37-393, gnl\|mm7\|chr4 (115694055-115693544)
	37-393, gnl\|Mm7\|chr4 (115693760-115693415)
	37-393, gnl\|oryCun1\|scaffold_87054 (2684-3269)
	37-393, gnl\|panTro1\|chr1_random (67393235-67392616)
	37-393, gnl\|rheMac2\|chr1 (48954071-48954674)
	37-393, gnl\|rn3\|chr5 (136589883-136589307)