Non-Coding RNA Search

Ss1.1-Pig1-99H23.5

Sequence:


               
               CAGGCCCTTCCTCATTGGAACTCTCAGGCCCCAATGGTTCCAGTGAGGGCAGGGCCTGAG
CTGGAGCAGGCTGGCAGCTCTGGGCCCCAAACCGGTTTTCCCACCTCAGCTGAGGCTGGC
ACATCACCCCTGTGGTTCCCTGCCCCCACCTCCTTGCGGTTCTTCCTCTCTCCACCCTGG
AATGTTGGGGGGCAGGGGCGGCGGTGGTGGCAGGTATCCAAGTCATCTTTTTAAACAAGA
AGGTGGAGTGACTGTTCCACACTTGGCCTTCCGTACCTCTGGTGTTCCAGGCCTTGAAGA
CTTCAAAGCTAGGTAACAGCAAAAAGAAGTTGGGATTCCCAGCCCCAATGGGGTTCCCAT
CTGAGCCCTGGAGGATGGGACAGAGAAGCCCAGCCTACCCCCTGGCCTGCTCTGGAGTAA
GTAGAGGCGAGCCGTGTCCTTCTCCCCGTGTGCCCCTGACCGATCCAAGTCCACCTCAAA
TACCAACAAGGCAGATCACTTCCATTTGTCTCCTGCCAACAACACCTCTTGCTGAAACAG
GCCATCTCATTAATCAGCTCACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCCCTTCCTCATTGGAACTCTCAGGCCCCAATGGTTCCAGTGAGGGCAGGGCCTGAG
CTGGAGCAGGCTGGCAGCTCTGGGCCCCAAACCGGTTTTCCCACCTCAGCTGAGGCTGGC
ACATCACCCCTGTGGTTCCCTGCCCCCACCTCCTTGCGGTTCTTCCTCTCTCCACCCTGG
AATGTTGGGGGGCAGGGGCGGCGGTGGTGGCAGGTATCCAAGTCATCTTTTTAAACAAGA
AGGTGGAGTGACTGTTCCACACTTGGCCTTCCGTACCTCTGGTGTTCCAGGCCTTGAAGA
CTTCAAAGCTAGGTAACAGCAAAAAGAAGTTGGGATTCCCAGCCCCAATGGGGTTCCCAT
CTGAGCCCTGGAGGATGGGACAGAGAAGCCCAGCCTACCCCCTGGCCTGCTCTGGAGTAA
GTAGAGGCGAGCCGTGTCCTTCTCCCCGTGTGCCCCTGACCGATCCAAGTCCACCTCAAA
TACCAACAAGGCAGATCACTTCCATTTGTCTCCTGCCAACAACACCTCTTGCTGAAACAG
GCCATCTCATTAATCAGCTCACAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-99, - strand, RNAz p=0.997107

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-99, - strand, RNAz p=0.997107

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               1-63, + strand, RNAmicro p=0.964754

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1-63, + strand, RNAmicro p=0.964754

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-552, gnl|bosTau2|chr13 (33758704-33758135)
               

               
               1-552, gnl|Hg17|chr20 (3711906-3711287)
               

               
               1-552, gnl|Mm7|chr2 (130917553-130916905)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr13 (33758704-33758135)
               

               
               1-552, gnl|Hg17|chr20 (3711906-3711287)
               

               
               1-552, gnl|Mm7|chr2 (130917553-130916905)

	1-552, gnl\|bosTau2\|chr13 (33758704-33758135)
	1-552, gnl\|Hg17\|chr20 (3711906-3711287)
	1-552, gnl\|Mm7\|chr2 (130917553-130916905)