Non-Coding RNA Search

Ss1.1-Pig2-100M11.5

Sequence:


               
               ATCGGGGATGACTGGACAGGATGGCCTGGCCGGGAGGCGGGCCGCACCTGGCAGCACTGA
ATGTGGGCTGCGGGCGGGGGCGCGCCCGGGCCCCCCCCTCCCCCCTCCCGACCCCACGGT
TGCACTTTATTTATTCGGTTCTTGCTTTGGTGACTGGGTGGGCCCCGACCGCGGTCCCAG
GATGTGTGCAGAGCTCCGCCCTCCTCCCCGTACACACCTCCCGTCCCTCAGTCTGCCCGC
CGCCCCCAGCCTGGGGCCGGAACAGCCTCCCAGTCCTGGGCAGACGTCCTCGGGTTGTCT
CCCTAGCACCCCGTACACACTGACAGAGACAGCAATACCCACCCCCATATTAAATAAACG
TCTCCACCACCAAAAAAAAAAAAAGGGGGGGGCCTTTTAAAATTTCCCTGGGGGGGGCCA
AATTTACCCCTCCCCATTTTTTTTTGAAAAAGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGGGGATGACTGGACAGGATGGCCTGGCCGGGAGGCGGGCCGCACCTGGCAGCACTGA
ATGTGGGCTGCGGGCGGGGGCGCGCCCGGGCCCCCCCCTCCCCCCTCCCGACCCCACGGT
TGCACTTTATTTATTCGGTTCTTGCTTTGGTGACTGGGTGGGCCCCGACCGCGGTCCCAG
GATGTGTGCAGAGCTCCGCCCTCCTCCCCGTACACACCTCCCGTCCCTCAGTCTGCCCGC
CGCCCCCAGCCTGGGGCCGGAACAGCCTCCCAGTCCTGGGCAGACGTCCTCGGGTTGTCT
CCCTAGCACCCCGTACACACTGACAGAGACAGCAATACCCACCCCCATATTAAATAAACG
TCTCCACCACCAAAAAAAAAAAAAGGGGGGGGCCTTTTAAAATTTCCCTGGGGGGGGCCA
AATTTACCCCTCCCCATTTTTTTTTGAAAAAGGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               232-372, - strand, RNAz p=0.89262

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-372, - strand, RNAz p=0.89262

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               143-282, - strand, RNAmicro p=0.992915

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               143-282, - strand, RNAmicro p=0.992915

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-372, gnl|bosTau2|chr15 (28720577-28720194)
               

               
               5-372, gnl|Hg17|chr11 (6426792-6426419)
               

               
               5-372, gnl|Mm7|chr7 (101667437-101667071)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-372, gnl|bosTau2|chr15 (28720577-28720194)
               

               
               5-372, gnl|Hg17|chr11 (6426792-6426419)
               

               
               5-372, gnl|Mm7|chr7 (101667437-101667071)

	5-372, gnl\|bosTau2\|chr15 (28720577-28720194)
	5-372, gnl\|Hg17\|chr11 (6426792-6426419)
	5-372, gnl\|Mm7\|chr7 (101667437-101667071)