Non-Coding RNA Search

Ss1.1-Pig2-101P18.5

Sequence:


               
               CGCAAGTTCTCCGGAGGCTGCAGGGACGTCCCAACTGATCCAGCTGCGGGTGCAGGGGAA
GGAGAAGCACCAGATGCTGGAAGTCTCGCTGCCTCGCGATTCTCCTCTCAAGACCCTCAT
GTCCCGCTACGAGGAGGCCATGGGACTCTCAGGCTGCAAGCTCACCTTCTTCTTTGACGG
GACGAAGCTCTCAGGCAAGGAGCTGCCGGCTGATCTGGGCATGGAATCCGGGGACCTTAT
CGAGGTCTGGGGCTGAAATCCCACTCCCTGTTCGGAGGCCTGGCCTGGACTTGGGGGAGA
ACAGCTGCCCCCCTTGGGCCCCCTAAGGGCTCGCCGAAGCTGATGTGGGACTTCTCTTCA
ACCTGAAGCAAAGTTAAGGAGTGATCTTTGACCCCCACACCCCGCTTTCCTGTCGACCCC
AGTTTCAAGCCTTTAGTTCCCCAGTTAGTTGTGTGGTTGTCCTTGCTGCCTTGGGTGGAC
TGTGGTTCCATCCACAGGGTGTGCTGACTTTTGCAGCCACCTGCTGGGACATGGAGAAGG
CACCCTCCCCCTCCTCCTCCCCCCCCATCACCCTTTCCTTCTTTGAAATGTTTATTTTAT
GAAGCTGCTCGTGTTTACAGGGTGGGTTGAAATCAGGAAGGACTGGGTATGGGATTCCAG
GCCCGGGATCTAGGCCCCATCTAGGAGCAGCGGTGGCCTCCGTGTCCTTTGGGGATGAAG
TGTGCTCGAGGCACAGACAGGGCTGTGGCTTCCCGGCCAGCAGGACACTAAATGATCAGC
CCACACATGCATTAGCTTGAGTGGAGGCAGACGATGGCTCTTCTTTTGAAGAATACAAGG
TAGATTCTCAGCCTTGCATGTCTTCCTCGTCCCAGGTCCCTTTCGAGCCACCTTCCTGAT
GCACAGACTGTGGAAGGCATAATTGAACACCCTGAGCCCTTTGGTTTCGGATCTCAGGAT
TACAGTCCACACCAGGCTTCTCTGGTCTTAAGGCTTTTCTTCTTCCTTCACGCCATCCTC
TCCTGTTAAGCAGCCTTTCTAAGGTGTCAATTACATGTCTTTGAATGTGAATGTATCCTT
GAAAAATGCTGTATGTGTGAATATACCTTTTCTGTTTGTCATATTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAAGTTCTCCGGAGGCTGCAGGGACGTCCCAACTGATCCAGCTGCGGGTGCAGGGGAA
GGAGAAGCACCAGATGCTGGAAGTCTCGCTGCCTCGCGATTCTCCTCTCAAGACCCTCAT
GTCCCGCTACGAGGAGGCCATGGGACTCTCAGGCTGCAAGCTCACCTTCTTCTTTGACGG
GACGAAGCTCTCAGGCAAGGAGCTGCCGGCTGATCTGGGCATGGAATCCGGGGACCTTAT
CGAGGTCTGGGGCTGAAATCCCACTCCCTGTTCGGAGGCCTGGCCTGGACTTGGGGGAGA
ACAGCTGCCCCCCTTGGGCCCCCTAAGGGCTCGCCGAAGCTGATGTGGGACTTCTCTTCA
ACCTGAAGCAAAGTTAAGGAGTGATCTTTGACCCCCACACCCCGCTTTCCTGTCGACCCC
AGTTTCAAGCCTTTAGTTCCCCAGTTAGTTGTGTGGTTGTCCTTGCTGCCTTGGGTGGAC
TGTGGTTCCATCCACAGGGTGTGCTGACTTTTGCAGCCACCTGCTGGGACATGGAGAAGG
CACCCTCCCCCTCCTCCTCCCCCCCCATCACCCTTTCCTTCTTTGAAATGTTTATTTTAT
GAAGCTGCTCGTGTTTACAGGGTGGGTTGAAATCAGGAAGGACTGGGTATGGGATTCCAG
GCCCGGGATCTAGGCCCCATCTAGGAGCAGCGGTGGCCTCCGTGTCCTTTGGGGATGAAG
TGTGCTCGAGGCACAGACAGGGCTGTGGCTTCCCGGCCAGCAGGACACTAAATGATCAGC
CCACACATGCATTAGCTTGAGTGGAGGCAGACGATGGCTCTTCTTTTGAAGAATACAAGG
TAGATTCTCAGCCTTGCATGTCTTCCTCGTCCCAGGTCCCTTTCGAGCCACCTTCCTGAT
GCACAGACTGTGGAAGGCATAATTGAACACCCTGAGCCCTTTGGTTTCGGATCTCAGGAT
TACAGTCCACACCAGGCTTCTCTGGTCTTAAGGCTTTTCTTCTTCCTTCACGCCATCCTC
TCCTGTTAAGCAGCCTTTCTAAGGTGTCAATTACATGTCTTTGAATGTGAATGTATCCTT
GAAAAATGCTGTATGTGTGAATATACCTTTTCTGTTTGTCATATTATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61817118|ref|XP_582378.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61817118|ref|XP_582378.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               463-580, - strand, RNAz p=0.748685

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               463-580, - strand, RNAz p=0.748685

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               98-1127, gnl|bosTau2|chr25 (24836072-24835071)
               

               
               98-1127, gnl|Hg17|chr16 (28882527-28883541)
               

               
               98-1127, gnl|Mm7|chr7 (122481697-122480697)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-1127, gnl|bosTau2|chr25 (24836072-24835071)
               

               
               98-1127, gnl|Hg17|chr16 (28882527-28883541)
               

               
               98-1127, gnl|Mm7|chr7 (122481697-122480697)

	98-1127, gnl\|bosTau2\|chr25 (24836072-24835071)
	98-1127, gnl\|Hg17\|chr16 (28882527-28883541)
	98-1127, gnl\|Mm7\|chr7 (122481697-122480697)