Non-Coding RNA Search

Ss1.1-Pig2-102D15.5

Sequence:


               
               TTGACTTTTAAATATTTTCTTCTAAGGGAGGGGGTGAGGGGGGCAAAAGTCAGGAAAGAG
CAAATAAAAACAAATCAAAATAAGTTCCCCCTCCCTAAAAGAAAGCTGTCATCCAGCCAC
CACTCATACACACATCGAAGGCCTCTGAACAGAGTCACTTTGCTGGACCAACAGCCAGAC
AGAACTGACCTGCTTCTGCCCCATCCTCATCTCCCTTTCTGGTGAATGAGGGGTGGTGGT
GGATGGTCGCCCTGTTTTCGAGCTCTGGGTGGACAAAGGGGCTTCCAGAAAGAGAGGAAG
AGGATGGCCAGTGGGAATGGGCTGGCTTTGTCCTCGGCCCTGGTGGCCAAGCGCCCTTCC
GCCCTAGGCCCATTCCCCAGATACATCTGGATCCACCAGGACACACCCCAAGACAGCTTA
GACAAGACTTGCCATGAAATCTGGAAGAGAGTTCAGGGCCTGCCTGAGGCCTTGCAGCCC
AGGACCTCAAAGGAGCAGCTCTCTGCCCCTGTGGCTGGCACTCCAAGAGACAACGGGCCC
AGCTTCCAAGAAGAGGCTCTGGAGCTCACCAGTGGCAAAGATGAGATCTCCTTGTTGGTG
GAGCAGGAGTTCTTGAACCTCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGACTTTTAAATATTTTCTTCTAAGGGAGGGGGTGAGGGGGGCAAAAGTCAGGAAAGAG
CAAATAAAAACAAATCAAAATAAGTTCCCCCTCCCTAAAAGAAAGCTGTCATCCAGCCAC
CACTCATACACACATCGAAGGCCTCTGAACAGAGTCACTTTGCTGGACCAACAGCCAGAC
AGAACTGACCTGCTTCTGCCCCATCCTCATCTCCCTTTCTGGTGAATGAGGGGTGGTGGT
GGATGGTCGCCCTGTTTTCGAGCTCTGGGTGGACAAAGGGGCTTCCAGAAAGAGAGGAAG
AGGATGGCCAGTGGGAATGGGCTGGCTTTGTCCTCGGCCCTGGTGGCCAAGCGCCCTTCC
GCCCTAGGCCCATTCCCCAGATACATCTGGATCCACCAGGACACACCCCAAGACAGCTTA
GACAAGACTTGCCATGAAATCTGGAAGAGAGTTCAGGGCCTGCCTGAGGCCTTGCAGCCC
AGGACCTCAAAGGAGCAGCTCTCTGCCCCTGTGGCTGGCACTCCAAGAGACAACGGGCCC
AGCTTCCAAGAAGAGGCTCTGGAGCTCACCAGTGGCAAAGATGAGATCTCCTTGTTGGTG
GAGCAGGAGTTCTTGAACCTCACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57096612|ref|XP_549436.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57096612|ref|XP_549436.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-118, - strand, RNAz p=0.933456
               

               
               199-553, - strand, RNAz p=0.995629

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.933456
               

               
               199-553, - strand, RNAz p=0.995629

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-555, gnl|bosTau2|chr3 (79373192-79372640)
               

               
               1-555, gnl|Hg17|chr1 (34312253-34312804)
               

               
               1-555, gnl|Mm7|chr4 (127415707-127415167)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-555, gnl|bosTau2|chr3 (79373192-79372640)
               

               
               1-555, gnl|Hg17|chr1 (34312253-34312804)
               

               
               1-555, gnl|Mm7|chr4 (127415707-127415167)

	1-118, - strand, RNAz p=0.933456
	199-553, - strand, RNAz p=0.995629

	1-555, gnl\|bosTau2\|chr3 (79373192-79372640)
	1-555, gnl\|Hg17\|chr1 (34312253-34312804)
	1-555, gnl\|Mm7\|chr4 (127415707-127415167)