Non-Coding RNA Search

Ss1.1-Pig2-102F10.5

Sequence:


               
               GCCCAGGCATCACGGGATGGAGGTACGGGGTGGGGTTGGAGACCCCCCATTCCACACGCT
GCTCCTTGCATTCAACTGTCTGTTTGTGTCTTCTCTTTCCCCAGGAAAAACGTACAAAAA
AGGGCATGGCCACCGCCAAACAGAGGCTTGGGAAAATTTTGAAAATTCATCGGAACGGAA
AACTACTCCTTTAAAATTTGGAAAGCCAGGATCCTTCTGCTCCGCTCAGGACCCCCGGAG
CCCCGCTAGAACATCGGCCCCCAGGAGGGTGGCCTCGCTGCCTCACCCCAGGGAGGGCCT
GGCCACCTCCCGGCCACTCCCCCCCCCCATATGAGCGTCTGTTGCTTCAGCAGGCGGAGC
TCGCCAACACGGACAGATGTCCTTTCTCAAGTTGCTTAGAGTGACCCGTTCCCGAAATGT
GGCCCTGCCAGTTTGAGGACCATTCCAGTTTCAGGACAGCCTCCAGGCATCCCCGAGCAT
GGGTGTGATTGCAGAGCTTCTGCAGCTCTGCTGGGAGCATGAGTCCTTCAAGGAAGGAGG
AGTGAGCCACTGCTCACCAAGCCCAGAGTCTGAGCTGGCCACAGGCTGGCAGCCTCCAGA
GGCTTAAAAAAAGGCAAAGAACACTAGAGAGGAAGAGGAGGAGAAAGTGGGGTGTGTGTG
TGCCCCCTTCTTTTCCTAAGTGATTCTAAGACAAGTCCAGAGAGTGTTCGGCCCGGCCAG
GAGAGGAGCCTCTGTGCTTCCCCGCTGGTGGGCGGTGGGCCGGATGGTGGGTGTCGCGCC
CTGAATGCCTGGGGCATTTCTCGGGGCCGGCTGGGGCCGGCAGCAGGGTCAGTGTGTCAA
TGAGGGGGACCATCATGGGGTCCTCAGGGAAGGGCTTGGGCCCGGCCACAATGTGGGGCC
CAGGGGGCCCCACCCAGGCTAAGCCATGGGGGTGGGCCCCATCCCGCCTGATCGGCTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCAGGCATCACGGGATGGAGGTACGGGGTGGGGTTGGAGACCCCCCATTCCACACGCT
GCTCCTTGCATTCAACTGTCTGTTTGTGTCTTCTCTTTCCCCAGGAAAAACGTACAAAAA
AGGGCATGGCCACCGCCAAACAGAGGCTTGGGAAAATTTTGAAAATTCATCGGAACGGAA
AACTACTCCTTTAAAATTTGGAAAGCCAGGATCCTTCTGCTCCGCTCAGGACCCCCGGAG
CCCCGCTAGAACATCGGCCCCCAGGAGGGTGGCCTCGCTGCCTCACCCCAGGGAGGGCCT
GGCCACCTCCCGGCCACTCCCCCCCCCCATATGAGCGTCTGTTGCTTCAGCAGGCGGAGC
TCGCCAACACGGACAGATGTCCTTTCTCAAGTTGCTTAGAGTGACCCGTTCCCGAAATGT
GGCCCTGCCAGTTTGAGGACCATTCCAGTTTCAGGACAGCCTCCAGGCATCCCCGAGCAT
GGGTGTGATTGCAGAGCTTCTGCAGCTCTGCTGGGAGCATGAGTCCTTCAAGGAAGGAGG
AGTGAGCCACTGCTCACCAAGCCCAGAGTCTGAGCTGGCCACAGGCTGGCAGCCTCCAGA
GGCTTAAAAAAAGGCAAAGAACACTAGAGAGGAAGAGGAGGAGAAAGTGGGGTGTGTGTG
TGCCCCCTTCTTTTCCTAAGTGATTCTAAGACAAGTCCAGAGAGTGTTCGGCCCGGCCAG
GAGAGGAGCCTCTGTGCTTCCCCGCTGGTGGGCGGTGGGCCGGATGGTGGGTGTCGCGCC
CTGAATGCCTGGGGCATTTCTCGGGGCCGGCTGGGGCCGGCAGCAGGGTCAGTGTGTCAA
TGAGGGGGACCATCATGGGGTCCTCAGGGAAGGGCTTGGGCCCGGCCACAATGTGGGGCC
CAGGGGGCCCCACCCAGGCTAAGCCATGGGGGTGGGCCCCATCCCGCCTGATCGGCTATA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               441-636, - strand, RNAz p=0.958468
               

               
               829-960, - strand, RNAz p=0.999843

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               441-636, - strand, RNAz p=0.958468
               

               
               829-960, - strand, RNAz p=0.999843

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-960, gnl|bosTau2|chr8 (47619673-47620614)
               

               
               15-960, gnl|Hg17|chr9 (93519311-93520286)
               

               
               15-960, gnl|Mm7|chr13 (48287036-48286137)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-960, gnl|bosTau2|chr8 (47619673-47620614)
               

               
               15-960, gnl|Hg17|chr9 (93519311-93520286)
               

               
               15-960, gnl|Mm7|chr13 (48287036-48286137)

	441-636, - strand, RNAz p=0.958468
	829-960, - strand, RNAz p=0.999843

	15-960, gnl\|bosTau2\|chr8 (47619673-47620614)
	15-960, gnl\|Hg17\|chr9 (93519311-93520286)
	15-960, gnl\|Mm7\|chr13 (48287036-48286137)