Ss1.1-Pig2-102M05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAGTGGGAGCCTCGGCAGAGGGCATTTGGGATCGGAGGACCGAGGCCTCGGTGAGTCT GGGCCTGACAGTCCCGGACTCTTTGGAGGAGGACAGGAATGGCACTCAGCGTCAGCGGAC ACCCCAGGGACTGACGAGAGAGAAGTCTGCTCAGTGCGGGTGCTGAAAACAGGAACCCGC CTCCTGCAAGCCCCGCGCCTTCCTTGTTTCTAGCAGAGGAAGTTGCAGCCAGTTTAGCAA CTGCACCTCTCGAGAGCATGGGCTCCTCGGCACCCGCGAGAGGCCCGGCTGCCCGCTCAC TCGGCCACAGAGGCAGCAGCTGATGCCTTTCAAGAAGCCAGCGGCCTGAAAAAATGATAC ACGATGTATTCTAATCTGGGTCATTCTCCACCCAGAGGGCCCGGCGCGTGGCTGACGCTC CGTGTGGATTCCCTGTGCCGTTGGCTTCGAGCGGCTTCGACAGCCCGGGGGGAGAGAGAG ATGGGGAACAGCGTGCGATCCAGCCCAGCGCCTGCCGAGAGGTCAGCGCCCAGCCCAGAT GGAACGGACAGCGACTTCCTGGCAGTGCTGAGTGACTACCCGTCTCCTGACATCAGCCCC CCGATATTCCGCCGTGGGGAGAAACTGCGCGTGATTTCTGATGAAGGGGGCTGGTGGAAA GCCATTTCTCTTAGCACTGGTCGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAGTGGGAGCCTCGGCAGAGGGCATTTGGGATCGGAGGACCGAGGCCTCGGTGAGTCT GGGCCTGACAGTCCCGGACTCTTTGGAGGAGGACAGGAATGGCACTCAGCGTCAGCGGAC ACCCCAGGGACTGACGAGAGAGAAGTCTGCTCAGTGCGGGTGCTGAAAACAGGAACCCGC CTCCTGCAAGCCCCGCGCCTTCCTTGTTTCTAGCAGAGGAAGTTGCAGCCAGTTTAGCAA CTGCACCTCTCGAGAGCATGGGCTCCTCGGCACCCGCGAGAGGCCCGGCTGCCCGCTCAC TCGGCCACAGAGGCAGCAGCTGATGCCTTTCAAGAAGCCAGCGGCCTGAAAAAATGATAC ACGATGTATTCTAATCTGGGTCATTCTCCACCCAGAGGGCCCGGCGCGTGGCTGACGCTC CGTGTGGATTCCCTGTGCCGTTGGCTTCGAGCGGCTTCGACAGCCCGGGGGGAGAGAGAG ATGGGGAACAGCGTGCGATCCAGCCCAGCGCCTGCCGAGAGGTCAGCGCCCAGCCCAGAT GGAACGGACAGCGACTTCCTGGCAGTGCTGAGTGACTACCCGTCTCCTGACATCAGCCCC CCGATATTCCGCCGTGGGGAGAAACTGCGCGTGATTTCTGATGAAGGGGGCTGGTGGAAA GCCATTTCTCTTAGCACTGGTCGA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 139-254, - strand, RNAz p=0.949546 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 139-254, - strand, RNAz p=0.949546 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 139-284, gnl|bosTau2|chr14 (4640036-4639896) | |
| 139-284, gnl|canFam2|chr13 (32574933-32575428) | |
| 139-284, gnl|echTel1|scaffold_276607 (45895-45441) | |
| 139-284, gnl|hg17|chr8 (134156353-134156822) | |
| 139-284, gnl|Hg17|chr8 (134156548-134156395) | |
| 139-284, gnl|mm7|chr15 (66896282-66896761) | |
| 139-284, gnl|Mm7|chr15 (66896476-66896311) | |
| 139-284, gnl|oryCun1|scaffold_176605 (21188-20694) | |
| 139-284, gnl|panTro1|chr7 (137136671-137137140) | |
| 139-284, gnl|rheMac2|chr8 (135638771-135639241) | |
| 139-284, gnl|rn3|chr7 (104218040-104218527) | |
| 325-542, gnl|bosTau2|chr14 (4628354-4628137) | |
| 325-542, gnl|canFam2|chr13 (32561575-32561980) | |
| 325-542, gnl|dasNov1|scaffold_157394 (356-760) | |
| 325-542, gnl|echTel1|scaffold_318317 (413-16) | |
| 325-542, gnl|hg17|chr8 (134141500-134141903) | |
| 325-542, gnl|Hg17|chr8 (134141745-134141526) | |
| 325-542, gnl|mm7|chr15 (66885083-66885487) | |
| 325-542, gnl|Mm7|chr15 (66885325-66885109) | |
| 325-542, gnl|monDom2|scaffold_3 (17235588-17235171) | |
| 325-542, gnl|oryCun1|scaffold_176605 (33420-33030) | |
| 325-542, gnl|panTro1|chr7 (137121842-137122245) | |
| 325-542, gnl|rheMac2|chr8 (135624039-135624442) | |
| 325-542, gnl|rn3|chr7 (104207035-104207438) | |
| 547-652, gnl|bosTau2|chr14 (4617885-4617780) | |
| 547-652, gnl|canFam2|chr13 (32553246-32553384) | |
| 547-652, gnl|danRer3|chrNA (59672043-59671926) | |
| 547-652, gnl|dasNov1|scaffold_9326 (39210-39077) | |
| 547-652, gnl|fr1|chrUn (247164466-247164336) | |
| 547-652, gnl|hg17|chr8 (134132225-134132376) | |
| 547-652, gnl|Hg17|chr8 (134132337-134132232) | |
| 547-652, gnl|loxAfr1|scaffold_21550 (9092-9230) | |
| 547-652, gnl|mm7|chr15 (66877342-66877475) | |
| 547-652, gnl|Mm7|chr15 (66877454-66877349) | |
| 547-652, gnl|monDom2|scaffold_3 (17252390-17252259) | |
| 547-652, gnl|oryCun1|scaffold_176605 (41444-41306) | |
| 547-652, gnl|panTro1|chr7 (137112562-137112713) | |
| 547-652, gnl|rheMac2|chr8 (135614858-135615002) | |
| 547-652, gnl|rn3|chr7 (104199145-104199278) | |
| 547-652, gnl|xenTro1|scaffold_976 (117087-117241) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 139-284, gnl|bosTau2|chr14 (4640036-4639896) | |
| 139-284, gnl|canFam2|chr13 (32574933-32575428) | |
| 139-284, gnl|echTel1|scaffold_276607 (45895-45441) | |
| 139-284, gnl|hg17|chr8 (134156353-134156822) | |
| 139-284, gnl|Hg17|chr8 (134156548-134156395) | |
| 139-284, gnl|mm7|chr15 (66896282-66896761) | |
| 139-284, gnl|Mm7|chr15 (66896476-66896311) | |
| 139-284, gnl|oryCun1|scaffold_176605 (21188-20694) | |
| 139-284, gnl|panTro1|chr7 (137136671-137137140) | |
| 139-284, gnl|rheMac2|chr8 (135638771-135639241) | |
| 139-284, gnl|rn3|chr7 (104218040-104218527) | |
| 325-542, gnl|bosTau2|chr14 (4628354-4628137) | |
| 325-542, gnl|canFam2|chr13 (32561575-32561980) | |
| 325-542, gnl|dasNov1|scaffold_157394 (356-760) | |
| 325-542, gnl|echTel1|scaffold_318317 (413-16) | |
| 325-542, gnl|hg17|chr8 (134141500-134141903) | |
| 325-542, gnl|Hg17|chr8 (134141745-134141526) | |
| 325-542, gnl|mm7|chr15 (66885083-66885487) | |
| 325-542, gnl|Mm7|chr15 (66885325-66885109) | |
| 325-542, gnl|monDom2|scaffold_3 (17235588-17235171) | |
| 325-542, gnl|oryCun1|scaffold_176605 (33420-33030) | |
| 325-542, gnl|panTro1|chr7 (137121842-137122245) | |
| 325-542, gnl|rheMac2|chr8 (135624039-135624442) | |
| 325-542, gnl|rn3|chr7 (104207035-104207438) | |
| 547-652, gnl|bosTau2|chr14 (4617885-4617780) | |
| 547-652, gnl|canFam2|chr13 (32553246-32553384) | |
| 547-652, gnl|danRer3|chrNA (59672043-59671926) | |
| 547-652, gnl|dasNov1|scaffold_9326 (39210-39077) | |
| 547-652, gnl|fr1|chrUn (247164466-247164336) | |
| 547-652, gnl|hg17|chr8 (134132225-134132376) | |
| 547-652, gnl|Hg17|chr8 (134132337-134132232) | |
| 547-652, gnl|loxAfr1|scaffold_21550 (9092-9230) | |
| 547-652, gnl|mm7|chr15 (66877342-66877475) | |
| 547-652, gnl|Mm7|chr15 (66877454-66877349) | |
| 547-652, gnl|monDom2|scaffold_3 (17252390-17252259) | |
| 547-652, gnl|oryCun1|scaffold_176605 (41444-41306) | |
| 547-652, gnl|panTro1|chr7 (137112562-137112713) | |
| 547-652, gnl|rheMac2|chr8 (135614858-135615002) | |
| 547-652, gnl|rn3|chr7 (104199145-104199278) | |
| 547-652, gnl|xenTro1|scaffold_976 (117087-117241) |