Non-Coding RNA Search

Ss1.1-Pig2-104J16.5

Sequence:


               
               CTTCCTCCGCTCCTCAGCTTTCCCATCCATAGAGCTTTGGCCGAGGCGATCTGCAAACGT
CCAGATCCCCCTCCGTCAGCAGACACGCCAGTGCCTTGGCCTTGGAAGAGGGCGGATCTT
GTACGTATGGAGCCTAGACTTGCTGCTTTGAAGGGCTCCTTCCGCCTCCCTCCCTTCCTG
GCCCTGCTCTCTGGAGCCTGGCACTGGACGGGTGTGTTCAGAGGATCCTAGGTTGCCTGG
CCAGGCCCTGGCACCAGGTCCCAGGCAGGAGCAGCTGTTTTCCACCCCTCCCTGACAAGC
TCTATTTTTACCTCGGTGACCTTTAGAGAGGGTCTCCCAGGCCGGCTCAATGTGCCCTGC
CTGCCTCTCTGGAGAGAAGAGGTGGGAAGATCCCTCCCCACGCAGGCTGCCCAGGGCGTT
GCAGCCAGAGACAGGCCCATCCTAAGGCGAGGGTCTCCCCTCGGCCTGGTGCTTGGCCTC
CGGGAGTGATGCGGGTGCTGCCCGCCCCCGCAGCCCCGACCTGGGCCTTCCAGGCAGTCG
GGGCAGGCTGTGGGCTCACGGCTGAGCTGCTGAGGGAAGAGTTGGCGGGGCTCTCTGCTG
TCCTCTGGCTGTATCCTCTGCGGCCCATTTGGAGAGAGAGAGCCCAAAGCTTCCTTGTTA
GGGAAGTATGCCAGCAGTGGCCAGGATGCATAGCGGAGATTCTAGCAGGGGTTGGACTGG
CTCGGAAGACGGCCGAGGGCTTGCCCAGTCCTGAAGGCACCCCATGGCATTAGGAAGGGG
GGAGTGTGGCCGGAGGACCGGCTGGGCAGGTGAGCTCGGGCGGGTGAGTGAGGGGTTAGA
CCAGAGTCTACCTGCGTTTCTGGTCCCTTAGGAAGCACCTGAGTGTTTAGTTCCAGGCCA
CAGCGTCCCCATCGTGACCAGATGAGCGGGCACTGTTCCCCCTCATCTCTTTCCCATTGC
ACTCTGGCCTCGCCAGTGTCTATGCCCGTGACCTTGGGGTGCCTGGCTGCAGGCCCTGGC
CTGCCCTTTAAGCCATAATGACTGATGCCAGTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCTCCGCTCCTCAGCTTTCCCATCCATAGAGCTTTGGCCGAGGCGATCTGCAAACGT
CCAGATCCCCCTCCGTCAGCAGACACGCCAGTGCCTTGGCCTTGGAAGAGGGCGGATCTT
GTACGTATGGAGCCTAGACTTGCTGCTTTGAAGGGCTCCTTCCGCCTCCCTCCCTTCCTG
GCCCTGCTCTCTGGAGCCTGGCACTGGACGGGTGTGTTCAGAGGATCCTAGGTTGCCTGG
CCAGGCCCTGGCACCAGGTCCCAGGCAGGAGCAGCTGTTTTCCACCCCTCCCTGACAAGC
TCTATTTTTACCTCGGTGACCTTTAGAGAGGGTCTCCCAGGCCGGCTCAATGTGCCCTGC
CTGCCTCTCTGGAGAGAAGAGGTGGGAAGATCCCTCCCCACGCAGGCTGCCCAGGGCGTT
GCAGCCAGAGACAGGCCCATCCTAAGGCGAGGGTCTCCCCTCGGCCTGGTGCTTGGCCTC
CGGGAGTGATGCGGGTGCTGCCCGCCCCCGCAGCCCCGACCTGGGCCTTCCAGGCAGTCG
GGGCAGGCTGTGGGCTCACGGCTGAGCTGCTGAGGGAAGAGTTGGCGGGGCTCTCTGCTG
TCCTCTGGCTGTATCCTCTGCGGCCCATTTGGAGAGAGAGAGCCCAAAGCTTCCTTGTTA
GGGAAGTATGCCAGCAGTGGCCAGGATGCATAGCGGAGATTCTAGCAGGGGTTGGACTGG
CTCGGAAGACGGCCGAGGGCTTGCCCAGTCCTGAAGGCACCCCATGGCATTAGGAAGGGG
GGAGTGTGGCCGGAGGACCGGCTGGGCAGGTGAGCTCGGGCGGGTGAGTGAGGGGTTAGA
CCAGAGTCTACCTGCGTTTCTGGTCCCTTAGGAAGCACCTGAGTGTTTAGTTCCAGGCCA
CAGCGTCCCCATCGTGACCAGATGAGCGGGCACTGTTCCCCCTCATCTCTTTCCCATTGC
ACTCTGGCCTCGCCAGTGTCTATGCCCGTGACCTTGGGGTGCCTGGCTGCAGGCCCTGGC
CTGCCCTTTAAGCCATAATGACTGATGCCAGTTCCT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               286-397, - strand, RNAz p=0.898016
               

               
               542-631, + strand, RNAz p=0.669442
               

               
               859-1043, - strand, RNAz p=0.789741

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               286-397, - strand, RNAz p=0.898016
               

               
               542-631, + strand, RNAz p=0.669442
               

               
               859-1043, - strand, RNAz p=0.789741

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

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               226-397, gnl|bosTau2|chr7 (39262184-39262354)
               

               
               226-397, gnl|canFam2|chr4 (61700060-61699898)
               

               
               226-397, gnl|hg17|chr5 (150017354-150017517)
               

               
               226-397, gnl|Hg17|chr5 (150017392-150017564)
               

               
               226-397, gnl|loxAfr1|scaffold_133578 (1062-899)
               

               
               226-397, gnl|mm7|chr18 (60984878-60984720)
               

               
               226-397, gnl|Mm7|chr18 (60984839-60984674)
               

               
               226-397, gnl|monDom2|scaffold_6 (56947074-56947259)
               

               
               226-397, gnl|panTro1|chr4 (156967919-156968082)
               

               
               226-397, gnl|rheMac2|chr6 (147131005-147131168)
               

               
               226-397, gnl|rn3|chr18 (56617753-56617594)
               


               
               542-1043, gnl|bosTau2|chr7 (39262519-39263045)
               

               
               542-1043, gnl|canFam2|chr4 (61699873-61698940)
               

               
               542-1043, gnl|hg17|chr5 (150017543-150018428)
               

               
               542-1043, gnl|Hg17|chr5 (150017712-150018249)
               

               
               542-1043, gnl|loxAfr1|scaffold_133578 (874-8)
               

               
               542-1043, gnl|mm7|chr18 (60984693-60983932)
               

               
               542-1043, gnl|oryCun1|scaffold_192054 (4292-3469)
               

               
               542-1043, gnl|panTro1|chr4 (156968108-156968994)
               

               
               542-1043, gnl|rheMac2|chr6 (147131194-147132079)
               

               
               542-1043, gnl|rn3|chr18 (56617567-56616787)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               226-397, gnl|bosTau2|chr7 (39262184-39262354)
               

               
               226-397, gnl|canFam2|chr4 (61700060-61699898)
               

               
               226-397, gnl|hg17|chr5 (150017354-150017517)
               

               
               226-397, gnl|Hg17|chr5 (150017392-150017564)
               

               
               226-397, gnl|loxAfr1|scaffold_133578 (1062-899)
               

               
               226-397, gnl|mm7|chr18 (60984878-60984720)
               

               
               226-397, gnl|Mm7|chr18 (60984839-60984674)
               

               
               226-397, gnl|monDom2|scaffold_6 (56947074-56947259)
               

               
               226-397, gnl|panTro1|chr4 (156967919-156968082)
               

               
               226-397, gnl|rheMac2|chr6 (147131005-147131168)
               

               
               226-397, gnl|rn3|chr18 (56617753-56617594)
               


               
               542-1043, gnl|bosTau2|chr7 (39262519-39263045)
               

               
               542-1043, gnl|canFam2|chr4 (61699873-61698940)
               

               
               542-1043, gnl|hg17|chr5 (150017543-150018428)
               

               
               542-1043, gnl|Hg17|chr5 (150017712-150018249)
               

               
               542-1043, gnl|loxAfr1|scaffold_133578 (874-8)
               

               
               542-1043, gnl|mm7|chr18 (60984693-60983932)
               

               
               542-1043, gnl|oryCun1|scaffold_192054 (4292-3469)
               

               
               542-1043, gnl|panTro1|chr4 (156968108-156968994)
               

               
               542-1043, gnl|rheMac2|chr6 (147131194-147132079)
               

               
               542-1043, gnl|rn3|chr18 (56617567-56616787)

	286-397, - strand, RNAz p=0.898016
	542-631, + strand, RNAz p=0.669442
	859-1043, - strand, RNAz p=0.789741

	226-397, gnl\|bosTau2\|chr7 (39262184-39262354)
	226-397, gnl\|canFam2\|chr4 (61700060-61699898)
	226-397, gnl\|hg17\|chr5 (150017354-150017517)
	226-397, gnl\|Hg17\|chr5 (150017392-150017564)
	226-397, gnl\|loxAfr1\|scaffold_133578 (1062-899)
	226-397, gnl\|mm7\|chr18 (60984878-60984720)
	226-397, gnl\|Mm7\|chr18 (60984839-60984674)
	226-397, gnl\|monDom2\|scaffold_6 (56947074-56947259)
	226-397, gnl\|panTro1\|chr4 (156967919-156968082)
	226-397, gnl\|rheMac2\|chr6 (147131005-147131168)
	226-397, gnl\|rn3\|chr18 (56617753-56617594)

	542-1043, gnl\|bosTau2\|chr7 (39262519-39263045)
	542-1043, gnl\|canFam2\|chr4 (61699873-61698940)
	542-1043, gnl\|hg17\|chr5 (150017543-150018428)
	542-1043, gnl\|Hg17\|chr5 (150017712-150018249)
	542-1043, gnl\|loxAfr1\|scaffold_133578 (874-8)
	542-1043, gnl\|mm7\|chr18 (60984693-60983932)
	542-1043, gnl\|oryCun1\|scaffold_192054 (4292-3469)
	542-1043, gnl\|panTro1\|chr4 (156968108-156968994)
	542-1043, gnl\|rheMac2\|chr6 (147131194-147132079)
	542-1043, gnl\|rn3\|chr18 (56617567-56616787)