Non-Coding RNA Search

Ss1.1-Pig2-106E03.5

Sequence:


               
               GCGGCCTCCACTGAGTGGGATGGGGAGCTCTGGAGGCTTCCTGAGCGGGGGAAGCAATAC
TGTCAGATCTGAGTTGGAAAAGGACCCCTCTGGATTTGGCAGAACCAGAGGAGTGGCTCA
GCTGGATTCCCCAGGTCTCAGCCGGAAGTCCATGTGCAGAACCAACAGAGGCACGGGTGG
TGGCTACTTCCTGGCGGGACGAAGCATGATGTGGTGGCCGGTTGGGGCCTCCCTCTTTGC
CAGCAACATCGGCAGCGGCCACTTTGTGGGCCTGGCAGGGACTGGTGCGGCGAGCGGCCT
GGCTGTGGCTGGATTTGAGTGGAATGCTCTGTTTGTGGTGCTGCTTCTGGGCTGGCTCTT
CGTGCCAGTGTACCTGACCGCCGGTGTCATTACCATGCCGCAGTATCTGCGCAAGCGCTT
TGGCGGCCATCGCATTCGCCTCTACCTGTCCGTGCTCTCGCTTTTTCTGTACATCTTCAC
GAAGATTTCGGTGGATATGTTCTCCGGGGCAGTGTTCATTCAACAGGCTCTGGGCTGGAA
CATCTACGCCTCTGTCATCGCCCTCCTGGTCATCACCATGATCTACACTGTGACAGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCTCCACTGAGTGGGATGGGGAGCTCTGGAGGCTTCCTGAGCGGGGGAAGCAATAC
TGTCAGATCTGAGTTGGAAAAGGACCCCTCTGGATTTGGCAGAACCAGAGGAGTGGCTCA
GCTGGATTCCCCAGGTCTCAGCCGGAAGTCCATGTGCAGAACCAACAGAGGCACGGGTGG
TGGCTACTTCCTGGCGGGACGAAGCATGATGTGGTGGCCGGTTGGGGCCTCCCTCTTTGC
CAGCAACATCGGCAGCGGCCACTTTGTGGGCCTGGCAGGGACTGGTGCGGCGAGCGGCCT
GGCTGTGGCTGGATTTGAGTGGAATGCTCTGTTTGTGGTGCTGCTTCTGGGCTGGCTCTT
CGTGCCAGTGTACCTGACCGCCGGTGTCATTACCATGCCGCAGTATCTGCGCAAGCGCTT
TGGCGGCCATCGCATTCGCCTCTACCTGTCCGTGCTCTCGCTTTTTCTGTACATCTTCAC
GAAGATTTCGGTGGATATGTTCTCCGGGGCAGTGTTCATTCAACAGGCTCTGGGCTGGAA
CATCTACGCCTCTGTCATCGCCCTCCTGGTCATCACCATGATCTACACTGTGACAGGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19911221|dbj|BAB86934.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19911221|dbj|BAB86934.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               389-508, + strand, RNAz p=0.934972

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               389-508, + strand, RNAz p=0.934972

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               150-600, gnl|bosTau2|chr16 (19196843-19197293)
               

               
               150-600, gnl|Hg17|chr21 (34389447-34389897)
               

               
               150-600, gnl|Mm7|chr16 (92127482-92127932)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-600, gnl|bosTau2|chr16 (19196843-19197293)
               

               
               150-600, gnl|Hg17|chr21 (34389447-34389897)
               

               
               150-600, gnl|Mm7|chr16 (92127482-92127932)

	150-600, gnl\|bosTau2\|chr16 (19196843-19197293)
	150-600, gnl\|Hg17\|chr21 (34389447-34389897)
	150-600, gnl\|Mm7\|chr16 (92127482-92127932)