Non-Coding RNA Search

Ss1.1-Pig2-106O14.5

Sequence:


               
               ACACTTAGCAGTTTGCAGATGGCCAGGCCCCAGAAGGCTGTGCTAGCCCTTCCTTGGAGA
GAAGGGGTGCAGACAGCTGCCGCCGGGCCCATCCTCTTGCCCAGCCTGCAGGGCAGCTAC
TTCGATCATCCCCTGCACCAGGGACTCGTGAGCCCCACCCGGCGTCTCTGCAGCCCCACC
TCTGCTCTAGCTCCCAAGTCCTCAAAGAAGCCCAAGATACAGGCCAGTGGGGACATGTTC
CCCAGTGACTGGAGCCCGCCACCTGTGGAGTTCTTGAACTTGAAGGCACTGCAGGCTGAC
AGGGCAGCCCCAGTCCAGAGGCAGGTGGATACAGTGGGGCCTTGGAGCCTAAGGAGACTG
GCCCACCAGCTCCCCGAGGGGTTACAGCAGGAGCCCCAGGACTCAGACTCCACGGAGCAC
CTGGCCTCACTTGAAGAGCTGTTCTGGAACATGGCAGGCACCAGCCCGAAGGCTGCAGCT
CCGGAGGTGGACACCCGCACCTCGTTCACCTCAGGGGGCTCAGAGTGCTATGTCAACAGC
TTGGATTACTTACTGCAAGAGAAGAGGGAGCAGGCCCTGGAGCAGGAGCGAGAGAAGCTG
CTTCTGCAGGACTGTCCTCACCTCAATTCCTCGGATCCTGATGAAGATGAAGTGCCCCTG
GCGCTGGAGCACAGGAAGCTGGCGGAGCGGTTCTCCACATCACTGCAGGGCATCCCAGCA
GGACACCCTGGCGAGACTGTGTTTGTACCCATGCATCACCCCCTGCCTCACATGCTGGAC
CATTCACGCCTGAAGCCTCGAAGTCACCTGGAAGAGCTGTTCCTCAGGTAAAATGCAGCA
TGGCCAGGCCCCTCCCTTACGGAACCCAGTGATGAGGACGACCCTGTATCACCAGGCTGT
GTTTTGCCAGTTTGGATAGGTAGACTTTTAGGGGAATGGATGAAATGGCACACGTGGCTG
CTTATAATGTTTCATTTACTCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACTTAGCAGTTTGCAGATGGCCAGGCCCCAGAAGGCTGTGCTAGCCCTTCCTTGGAGA
GAAGGGGTGCAGACAGCTGCCGCCGGGCCCATCCTCTTGCCCAGCCTGCAGGGCAGCTAC
TTCGATCATCCCCTGCACCAGGGACTCGTGAGCCCCACCCGGCGTCTCTGCAGCCCCACC
TCTGCTCTAGCTCCCAAGTCCTCAAAGAAGCCCAAGATACAGGCCAGTGGGGACATGTTC
CCCAGTGACTGGAGCCCGCCACCTGTGGAGTTCTTGAACTTGAAGGCACTGCAGGCTGAC
AGGGCAGCCCCAGTCCAGAGGCAGGTGGATACAGTGGGGCCTTGGAGCCTAAGGAGACTG
GCCCACCAGCTCCCCGAGGGGTTACAGCAGGAGCCCCAGGACTCAGACTCCACGGAGCAC
CTGGCCTCACTTGAAGAGCTGTTCTGGAACATGGCAGGCACCAGCCCGAAGGCTGCAGCT
CCGGAGGTGGACACCCGCACCTCGTTCACCTCAGGGGGCTCAGAGTGCTATGTCAACAGC
TTGGATTACTTACTGCAAGAGAAGAGGGAGCAGGCCCTGGAGCAGGAGCGAGAGAAGCTG
CTTCTGCAGGACTGTCCTCACCTCAATTCCTCGGATCCTGATGAAGATGAAGTGCCCCTG
GCGCTGGAGCACAGGAAGCTGGCGGAGCGGTTCTCCACATCACTGCAGGGCATCCCAGCA
GGACACCCTGGCGAGACTGTGTTTGTACCCATGCATCACCCCCTGCCTCACATGCTGGAC
CATTCACGCCTGAAGCCTCGAAGTCACCTGGAAGAGCTGTTCCTCAGGTAAAATGCAGCA
TGGCCAGGCCCCTCCCTTACGGAACCCAGTGATGAGGACGACCCTGTATCACCAGGCTGT
GTTTTGCCAGTTTGGATAGGTAGACTTTTAGGGGAATGGATGAAATGGCACACGTGGCTG
CTTATAATGTTTCATTTACTCATT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               70-187, - strand, RNAz p=0.966161
               

               
               268-387, - strand, RNAz p=0.980687

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               70-187, - strand, RNAz p=0.966161
               

               
               268-387, - strand, RNAz p=0.980687

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               345-459, - strand, RNAmicro p=0.975405

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               345-459, - strand, RNAmicro p=0.975405

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               70-521, gnl|bosTau2|chr11 (3336689-3337120)
               

               
               70-521, gnl|canFam2|chr10 (48139928-48139592)
               

               
               70-521, gnl|echTel1|scaffold_316196 (39612-39292)
               

               
               70-521, gnl|hg17|chr2 (97059451-97059777)
               

               
               70-521, gnl|Hg17|chr2 (97059928-97059486)
               

               
               70-521, gnl|loxAfr1|scaffold_123717 (4885-5177)
               

               
               70-521, gnl|mm7|chr1 (36902056-36902324)
               

               
               70-521, gnl|Mm7|chr1 (36902464-36902087)
               

               
               70-521, gnl|oryCun1|scaffold_214356 (80860-81174)
               

               
               70-521, gnl|panTro1|chr12 (100082764-100083090)
               

               
               70-521, gnl|rheMac2|chr13 (97412793-97413119)
               

               
               70-521, gnl|rn3|chr9 (35597071-35597355)
               


               
               672-984, gnl|bosTau2|chr11 (3346583-3346903)
               

               
               672-984, gnl|Hg17|chr2 (97048054-97047716)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-521, gnl|bosTau2|chr11 (3336689-3337120)
               

               
               70-521, gnl|canFam2|chr10 (48139928-48139592)
               

               
               70-521, gnl|echTel1|scaffold_316196 (39612-39292)
               

               
               70-521, gnl|hg17|chr2 (97059451-97059777)
               

               
               70-521, gnl|Hg17|chr2 (97059928-97059486)
               

               
               70-521, gnl|loxAfr1|scaffold_123717 (4885-5177)
               

               
               70-521, gnl|mm7|chr1 (36902056-36902324)
               

               
               70-521, gnl|Mm7|chr1 (36902464-36902087)
               

               
               70-521, gnl|oryCun1|scaffold_214356 (80860-81174)
               

               
               70-521, gnl|panTro1|chr12 (100082764-100083090)
               

               
               70-521, gnl|rheMac2|chr13 (97412793-97413119)
               

               
               70-521, gnl|rn3|chr9 (35597071-35597355)
               


               
               672-984, gnl|bosTau2|chr11 (3346583-3346903)
               

               
               672-984, gnl|Hg17|chr2 (97048054-97047716)

	70-187, - strand, RNAz p=0.966161
	268-387, - strand, RNAz p=0.980687

	70-521, gnl\|bosTau2\|chr11 (3336689-3337120)
	70-521, gnl\|canFam2\|chr10 (48139928-48139592)
	70-521, gnl\|echTel1\|scaffold_316196 (39612-39292)
	70-521, gnl\|hg17\|chr2 (97059451-97059777)
	70-521, gnl\|Hg17\|chr2 (97059928-97059486)
	70-521, gnl\|loxAfr1\|scaffold_123717 (4885-5177)
	70-521, gnl\|mm7\|chr1 (36902056-36902324)
	70-521, gnl\|Mm7\|chr1 (36902464-36902087)
	70-521, gnl\|oryCun1\|scaffold_214356 (80860-81174)
	70-521, gnl\|panTro1\|chr12 (100082764-100083090)
	70-521, gnl\|rheMac2\|chr13 (97412793-97413119)
	70-521, gnl\|rn3\|chr9 (35597071-35597355)

	672-984, gnl\|bosTau2\|chr11 (3346583-3346903)
	672-984, gnl\|Hg17\|chr2 (97048054-97047716)